Detailed information of deep learning profile BP000792.1

  1. Home
  2. Deep Learning Profile > BP000792.1
This page shows detailed deep learning-derived predictions and motifs for SRF in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000792.1
Cell line/tissue: Ishikawa
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BTD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.09 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.08 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.00 -0.00 0.00 0.01 0.04 0.00 0.05 0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1360 1259 1323 1413 1325 1653 1550 1429 1354 1258 1327 1644 1499 1414 1577 1403 1774 1005 628 1234 56 1 1794 416 3280 215 2430 1315 677 128 1681 2087 2880 1310 1878 1507 1409 1353 1316 1241 1544 1349 1411 1533 1254 1490 1370 1429 1297 1394 ]
C [ 1430 1477 1401 1368 1377 1246 1525 1571 1551 1517 1544 1523 1265 1243 1527 1581 1247 1017 633 910 5522 5432 317 87 192 188 208 139 9 62 1360 1944 563 948 912 1086 1281 1306 1183 1321 1186 1159 1341 1206 1399 1333 1355 1292 1385 1494 ]
G [ 1324 1448 1532 1484 1395 1297 1318 1277 1452 1222 1348 1133 1569 1624 1116 986 1160 502 1412 1672 33 5 141 115 361 41 193 254 4952 5340 1335 781 975 1134 1693 1644 1425 1505 1439 1686 1528 1443 1367 1529 1572 1317 1446 1463 1494 1365 ]
T [ 1531 1461 1389 1380 1548 1449 1252 1368 1288 1648 1426 1345 1312 1364 1425 1675 1464 3121 2972 1829 34 207 3393 5027 1812 5201 2814 3937 7 115 1269 833 1227 2253 1162 1408 1530 1481 1707 1397 1387 1694 1526 1377 1420 1505 1474 1461 1469 1392 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 0.00 -0.01 -0.07 0.03 0.03 0.05 0.01 0.05 0.02 0.03 -0.03 0.00 0.01 0.02 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.09 0.10 -0.02 -0.03 -0.03 -0.01 -0.04 -0.00 -0.04 -0.02 0.02 0.02 -0.00 0.00 ]
G [ 0.00 -0.01 0.02 0.02 -0.02 -0.04 -0.00 -0.03 -0.01 -0.03 -0.03 -0.02 0.10 0.08 0.01 0.00 0.01 0.01 ]
T [ -0.00 0.02 0.02 0.01 -0.03 0.02 0.02 0.05 0.02 0.05 0.03 0.03 -0.07 -0.01 0.01 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 867

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 552

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 148

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages