Detailed information of deep learning profile BP000790.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000790.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BMI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.01 0.05 0.00 0.04 0.01 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.08 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1299 1142 1153 1138 1228 1217 1149 1097 1154 1260 1077 1020 1375 1180 1206 1180 1075 1837 1083 704 1123 111 5 3031 2163 4169 1526 3763 2432 263 53 1141 1991 2234 1070 1200 1099 1010 1057 1072 1176 1219 1000 1047 1032 1092 1263 1166 1069 1150 ]
C [ 1018 1065 1178 1171 1117 1071 1245 1215 1102 1159 1188 1351 1158 1172 1043 1240 1259 864 722 621 1180 4166 3927 277 215 24 339 108 101 5 52 1613 1265 514 881 957 998 1416 1241 907 1043 1061 1224 1045 1068 1055 1108 1247 1282 1192 ]
G [ 1059 1153 1133 1053 1023 1105 1030 982 1058 1001 958 1058 986 1063 1202 945 796 889 509 1911 1136 73 5 146 239 146 152 179 374 4209 4291 867 620 819 989 1149 1131 1000 1166 1207 1259 1131 1159 1179 1161 1005 1123 1084 1031 1112 ]
T [ 1106 1122 1018 1120 1114 1089 1058 1188 1168 1062 1259 1053 963 1067 1031 1117 1352 892 2168 1246 1043 132 545 1028 1865 143 2465 432 1575 5 86 861 606 915 1542 1176 1254 1056 1018 1296 1004 1071 1099 1211 1221 1330 988 985 1100 1028 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.00 0.01 -0.02 -0.06 0.03 0.02 0.05 0.02 0.04 0.02 0.02 -0.02 0.00 0.01 0.02 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.08 0.08 -0.01 -0.02 -0.03 -0.01 -0.02 -0.00 -0.03 -0.01 0.03 0.02 0.00 0.01 ]
G [ 0.01 -0.00 0.03 0.02 -0.01 -0.04 -0.00 -0.02 -0.01 -0.03 -0.02 -0.01 0.09 0.08 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.02 0.00 -0.00 -0.02 0.02 0.02 0.04 0.01 0.05 0.02 0.03 -0.06 -0.01 0.00 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2080

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1735

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 293

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages