Detailed information of deep learning profile BP000790.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000790.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BMI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.08 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.01 0.04 0.00 0.05 0.01 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]

Frequency matrix

       
A [ 1028 1100 985 988 1330 1221 1211 1099 1071 1004 1296 1018 1056 1254 1176 1542 915 606 861 86 5 1575 432 2465 143 1865 1028 545 132 1043 1246 2168 892 1352 1117 1031 1067 963 1053 1259 1062 1168 1188 1058 1089 1114 1120 1018 1122 1106 ]
C [ 1112 1031 1084 1123 1005 1161 1179 1159 1131 1259 1207 1166 1000 1131 1149 989 819 620 867 4291 4209 374 179 152 146 239 146 5 73 1136 1911 509 889 796 945 1202 1063 986 1058 958 1001 1058 982 1030 1105 1023 1053 1133 1153 1059 ]
G [ 1192 1282 1247 1108 1055 1068 1045 1224 1061 1043 907 1241 1416 998 957 881 514 1265 1613 52 5 101 108 339 24 215 277 3927 4166 1180 621 722 864 1259 1240 1043 1172 1158 1351 1188 1159 1102 1215 1245 1071 1117 1171 1178 1065 1018 ]
T [ 1150 1069 1166 1263 1092 1032 1047 1000 1219 1176 1072 1057 1010 1099 1200 1070 2234 1991 1141 53 263 2432 3763 1526 4169 2163 3031 5 111 1123 704 1083 1837 1075 1180 1206 1180 1375 1020 1077 1260 1154 1097 1149 1217 1228 1138 1153 1142 1299 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.00 -0.01 -0.06 0.03 0.02 0.05 0.01 0.04 0.02 0.02 -0.02 -0.00 0.00 0.02 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.08 0.09 -0.01 -0.02 -0.03 -0.01 -0.02 -0.00 -0.04 -0.01 0.02 0.03 -0.00 0.01 ]
G [ 0.01 0.00 0.02 0.03 -0.01 -0.03 -0.00 -0.02 -0.01 -0.03 -0.02 -0.01 0.08 0.08 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.02 0.01 0.00 -0.02 0.02 0.02 0.04 0.02 0.05 0.02 0.03 -0.06 -0.02 0.01 -0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2080

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1735

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 293

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages