Detailed information of deep learning profile BP000789.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000789.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BLV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.01 0.06 0.01 0.04 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.08 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.08 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1074 1049 1031 1022 1026 1033 1036 1074 1252 1047 1031 1134 1032 1035 995 922 1500 959 610 797 108 13 2782 2070 3790 1347 3613 2270 185 37 1192 2006 2037 1020 1077 952 1056 1005 986 1014 1121 956 1005 939 1005 1103 968 986 1019 1086 ]
C [ 985 1101 1062 1034 1022 1132 1080 1008 994 1092 1150 1042 1092 1114 1226 1229 943 746 617 1102 3872 3635 260 164 35 314 124 100 4 38 1302 1053 394 724 767 825 1087 1075 845 967 904 1036 972 980 967 1030 1105 1078 1073 987 ]
G [ 1018 994 937 1016 1009 990 930 991 914 893 972 922 970 1030 841 773 695 462 1345 1176 58 11 122 244 116 110 86 345 3880 3953 837 560 819 1085 1230 1224 970 974 1119 1116 1064 1088 1075 1054 1031 1004 1033 1055 1068 1043 ]
T [ 1000 933 1047 1005 1020 922 1031 1004 917 1045 924 979 983 898 1015 1153 939 1910 1505 1002 39 418 913 1599 136 2306 254 1362 8 49 746 458 827 1248 1003 1076 964 1023 1127 980 988 997 1025 1104 1074 940 971 958 917 961 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.01 -0.01 -0.06 0.03 0.03 0.06 0.03 0.05 0.02 0.03 -0.02 0.01 0.02 0.02 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.08 0.09 -0.01 -0.03 -0.04 -0.01 -0.03 -0.01 -0.04 -0.02 0.02 0.02 -0.00 0.01 ]
G [ 0.01 -0.00 0.02 0.02 -0.01 -0.04 -0.01 -0.03 -0.01 -0.04 -0.03 -0.01 0.09 0.08 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.02 0.01 0.00 -0.02 0.03 0.02 0.05 0.02 0.05 0.03 0.03 -0.06 -0.01 0.00 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 106

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages