Detailed information of deep learning profile BP000789.1

  1. Home
  2. Deep Learning Profile > BP000789.1
This page shows detailed deep learning-derived predictions and motifs for SRF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000789.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BLV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.08 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.08 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 0.04 0.01 0.06 0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 961 917 958 971 940 1074 1104 1025 997 988 980 1127 1023 964 1076 1003 1248 827 458 746 49 8 1362 254 2306 136 1599 913 418 39 1002 1505 1910 939 1153 1015 898 983 979 924 1045 917 1004 1031 922 1020 1005 1047 933 1000 ]
C [ 1043 1068 1055 1033 1004 1031 1054 1075 1088 1064 1116 1119 974 970 1224 1230 1085 819 560 837 3953 3880 345 86 110 116 244 122 11 58 1176 1345 462 695 773 841 1030 970 922 972 893 914 991 930 990 1009 1016 937 994 1018 ]
G [ 987 1073 1078 1105 1030 967 980 972 1036 904 967 845 1075 1087 825 767 724 394 1053 1302 38 4 100 124 314 35 164 260 3635 3872 1102 617 746 943 1229 1226 1114 1092 1042 1150 1092 994 1008 1080 1132 1022 1034 1062 1101 985 ]
T [ 1086 1019 986 968 1103 1005 939 1005 956 1121 1014 986 1005 1056 952 1077 1020 2037 2006 1192 37 185 2270 3613 1347 3790 2070 2782 13 108 797 610 959 1500 922 995 1035 1032 1134 1031 1047 1252 1074 1036 1033 1026 1022 1031 1049 1074 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.00 -0.01 -0.06 0.03 0.03 0.05 0.02 0.05 0.02 0.03 -0.02 0.00 0.01 0.02 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.08 0.09 -0.01 -0.03 -0.04 -0.01 -0.03 -0.01 -0.04 -0.01 0.02 0.02 -0.00 0.01 ]
G [ 0.01 -0.00 0.02 0.02 -0.02 -0.04 -0.01 -0.03 -0.01 -0.04 -0.03 -0.01 0.09 0.08 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.02 0.02 0.01 -0.02 0.03 0.02 0.05 0.03 0.06 0.03 0.03 -0.06 -0.01 0.01 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 106

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages