Detailed information of deep learning profile BP000788.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000788.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BLK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.03 0.01 0.07 0.00 0.05 0.01 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.11 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.11 0.11 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 0.05 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 641 413 436 431 446 418 397 377 434 523 398 389 500 396 445 375 339 707 568 226 545 8 5 1452 731 1759 368 1634 1083 32 9 452 1004 1102 381 462 427 380 337 370 408 640 331 433 365 377 476 399 370 569 ]
C [ 413 454 525 517 502 441 698 703 485 643 695 759 650 579 423 561 569 378 275 252 536 1877 1723 57 44 7 107 50 51 3 14 620 472 164 562 369 352 753 748 363 449 401 587 395 417 404 445 675 681 509 ]
G [ 432 605 580 536 423 488 441 391 429 358 355 422 399 428 428 354 264 300 226 994 461 6 4 37 40 50 26 42 287 1879 1869 317 245 331 413 488 456 359 388 512 689 460 530 629 459 430 636 460 455 478 ]
T [ 428 442 373 430 543 567 378 443 566 390 466 344 365 511 618 624 742 529 845 442 372 23 182 368 1099 98 1413 188 493 0 22 525 193 317 558 595 679 422 441 669 368 413 466 457 673 703 357 380 408 358 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.01 -0.02 -0.07 0.04 0.04 0.07 0.02 0.06 0.02 0.03 -0.03 0.00 0.01 0.02 -0.00 ]
C [ 0.02 0.02 0.01 0.02 0.11 0.10 -0.02 -0.03 -0.05 -0.01 -0.04 -0.00 -0.04 -0.03 0.03 0.04 -0.00 0.01 ]
G [ 0.01 -0.00 0.04 0.03 -0.02 -0.04 -0.01 -0.04 -0.02 -0.05 -0.03 -0.02 0.12 0.11 0.01 0.01 0.02 0.02 ]
T [ -0.00 0.02 0.00 -0.01 -0.03 0.03 0.03 0.06 0.02 0.07 0.04 0.04 -0.08 -0.02 0.00 -0.01 0.00 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 943

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 518

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 65

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages