Detailed information of deep learning profile BP000788.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000788.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BLK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.05 0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.11 0.11 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.11 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.01 0.05 0.00 0.07 0.01 0.03 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 358 408 380 357 703 673 457 466 413 368 669 441 422 679 595 558 317 193 525 22 0 493 188 1413 98 1099 368 182 23 372 442 845 529 742 624 618 511 365 344 466 390 566 443 378 567 543 430 373 442 428 ]
C [ 478 455 460 636 430 459 629 530 460 689 512 388 359 456 488 413 331 245 317 1869 1879 287 42 26 50 40 37 4 6 461 994 226 300 264 354 428 428 399 422 355 358 429 391 441 488 423 536 580 605 432 ]
G [ 509 681 675 445 404 417 395 587 401 449 363 748 753 352 369 562 164 472 620 14 3 51 50 107 7 44 57 1723 1877 536 252 275 378 569 561 423 579 650 759 695 643 485 703 698 441 502 517 525 454 413 ]
T [ 569 370 399 476 377 365 433 331 640 408 370 337 380 427 462 381 1102 1004 452 9 32 1083 1634 368 1759 731 1452 5 8 545 226 568 707 339 375 445 396 500 389 398 523 434 377 397 418 446 431 436 413 641 ]

Hypothetical CWM

   
A [ 0.02 0.00 -0.01 0.00 -0.02 -0.08 0.04 0.04 0.07 0.02 0.06 0.03 0.03 -0.03 -0.01 0.00 0.02 -0.00 ]
C [ 0.02 0.02 0.01 0.01 0.11 0.12 -0.02 -0.03 -0.05 -0.02 -0.04 -0.01 -0.04 -0.02 0.03 0.04 -0.00 0.01 ]
G [ 0.01 -0.00 0.04 0.03 -0.03 -0.04 -0.00 -0.04 -0.01 -0.05 -0.03 -0.02 0.10 0.11 0.02 0.01 0.02 0.02 ]
T [ -0.00 0.02 0.01 0.00 -0.03 0.03 0.02 0.06 0.02 0.07 0.04 0.04 -0.07 -0.02 0.01 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 943

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 518

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 65

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages