Detailed information of deep learning profile BP000786.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000786.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.04 0.01 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 362 402 335 324 445 391 414 387 360 353 443 375 352 410 448 534 373 203 326 31 1 659 137 1009 90 655 379 176 19 284 347 751 270 425 376 337 332 313 331 428 316 365 389 321 387 372 357 314 348 373 ]
C [ 487 412 449 450 426 512 483 471 458 488 498 461 400 483 483 447 320 241 417 1622 1622 123 45 64 58 96 56 6 33 486 859 271 346 344 427 501 454 418 448 421 428 431 432 416 455 464 426 494 507 443 ]
G [ 496 539 508 472 451 444 446 506 468 446 384 533 614 468 383 359 223 666 606 32 2 43 37 233 17 98 115 1521 1608 613 262 292 403 572 522 429 503 488 561 469 488 496 486 575 448 457 494 483 449 428 ]
T [ 360 352 413 459 383 358 362 341 419 418 380 336 339 344 391 365 789 595 356 20 80 880 1486 399 1540 856 1155 2 45 322 237 391 686 364 380 438 416 486 365 387 473 413 398 393 415 412 428 414 401 461 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.00 -0.01 -0.06 0.03 0.02 0.05 0.00 0.04 0.01 0.01 -0.03 -0.01 -0.00 0.01 -0.01 ]
C [ 0.01 0.01 -0.00 0.00 0.07 0.08 -0.02 -0.03 -0.03 -0.01 -0.02 -0.02 -0.03 -0.02 0.02 0.03 0.00 0.00 ]
G [ 0.00 0.00 0.02 0.02 -0.02 -0.03 -0.02 -0.02 -0.00 -0.03 -0.03 -0.02 0.07 0.07 0.01 -0.00 0.01 0.01 ]
T [ -0.01 0.01 -0.00 -0.00 -0.03 0.01 0.02 0.04 0.00 0.05 0.02 0.03 -0.06 -0.02 0.01 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 907

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 153

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages