Detailed information of deep learning profile BP000786.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000786.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.01 0.04 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 461 401 414 428 412 415 393 398 413 473 387 365 486 416 438 380 364 686 391 237 322 45 2 1155 856 1540 399 1486 880 80 20 356 595 789 365 391 344 339 336 380 418 419 341 362 358 383 459 413 352 360 ]
C [ 428 449 483 494 457 448 575 486 496 488 469 561 488 503 429 522 572 403 292 262 613 1608 1521 115 98 17 233 37 43 2 32 606 666 223 359 383 468 614 533 384 446 468 506 446 444 451 472 508 539 496 ]
G [ 443 507 494 426 464 455 416 432 431 428 421 448 418 454 501 427 344 346 271 859 486 33 6 56 96 58 64 45 123 1622 1622 417 241 320 447 483 483 400 461 498 488 458 471 483 512 426 450 449 412 487 ]
T [ 373 348 314 357 372 387 321 389 365 316 428 331 313 332 337 376 425 270 751 347 284 19 176 379 655 90 1009 137 659 1 31 326 203 373 534 448 410 352 375 443 353 360 387 414 391 445 324 335 402 362 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.01 -0.02 -0.06 0.03 0.02 0.05 0.00 0.04 0.02 0.01 -0.03 -0.00 -0.00 0.01 -0.01 ]
C [ 0.01 0.01 -0.00 0.01 0.07 0.07 -0.02 -0.03 -0.03 -0.00 -0.02 -0.02 -0.03 -0.02 0.02 0.02 0.00 0.00 ]
G [ 0.00 0.00 0.03 0.02 -0.02 -0.03 -0.02 -0.02 -0.01 -0.03 -0.03 -0.02 0.08 0.07 0.00 -0.00 0.01 0.01 ]
T [ -0.01 0.01 -0.00 -0.01 -0.03 0.01 0.01 0.04 0.00 0.05 0.02 0.03 -0.06 -0.01 0.00 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 907

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 153

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages