JASPAR - GATA1 - BP000785.1

This page shows detailed deep learning-derived predictions and motifs for GATA1 in erythroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA1
Model ID:	BP000785.1
Cell line/tissue:	erythroblast
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0140.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15976
Source:	ENCSR000EXR
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 4334

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.01	0.00	0.07	0.00	0.05	0.03	-0.00	0.00	0.00	-0.00	]
C [	-0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.07	0.00	-0.00	-0.00	0.00	0.01	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.08	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	1088	1124	1136	1120	1102	1153	1197	1164	1158	1066	1132	1087	1077	1249	965	872	660	471	639	934	939	1015	1061	995	1351	750	2779	1	4318	3	3958	3427	811	1476	1422	1223	1143	1100	1077	1098	1014	1107	1124	1085	1137	1081	1142	1121	1106	1086	]
C [	1110	1041	1100	1066	1119	1074	1078	1051	1012	1126	1087	1167	1272	1047	1139	1505	817	672	1015	1029	1176	1085	984	1079	830	1724	158	2	8	5	28	120	853	884	954	1065	1015	1051	1026	995	1088	1074	1028	1095	1063	1088	1047	1040	1055	1038	]
G [	1117	1107	1117	1157	1061	1160	1091	1157	1149	1174	1191	1166	1134	1179	1257	1016	952	2094	1698	1227	1330	1311	1358	1233	1300	1265	90	4325	0	8	19	613	2292	1532	1180	1126	1107	1100	1110	1195	1173	1163	1170	1144	1070	1154	1056	1126	1145	1142	]
T [	1019	1062	981	991	1052	947	968	962	1015	968	924	914	851	859	973	941	1905	1097	982	1144	889	923	931	1027	853	595	1307	6	8	4318	329	174	378	442	778	920	1069	1083	1121	1046	1059	990	1012	1010	1064	1011	1089	1047	1028	1068	]

Hypothetical CWM

A [	-0.00	0.00	0.00	-0.01	0.02	-0.03	0.07	-0.05	0.05	0.03	-0.01	0.01	0.00	-0.00	-0.00	]
C [	0.01	0.00	0.01	0.02	0.01	-0.03	-0.02	-0.02	-0.02	-0.02	0.02	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.04	0.07	-0.05	-0.03	-0.05	0.01	0.02	0.01	0.01	0.01	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	0.01	-0.01	-0.03	0.08	0.01	-0.02	-0.01	-0.02	-0.00	-0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 29

CWM

PFM

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000782.1	GATA1	ENCSR000EFT	K562	Homo sapiens	MA0140.3
BP000783.1	GATA1	ENCSR000EWM	K562	Homo sapiens	MA0140.3
BP000784.1	GATA1	ENCSR000EXP	erythroblast	Homo sapiens	MA0140.3