JASPAR - GATA1 - BP000783.1

This page shows detailed deep learning-derived predictions and motifs for GATA1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA1
Model ID:	BP000783.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0140.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15976
Source:	ENCSR000EWM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6501

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.01	0.00	0.08	-0.00	0.05	0.03	-0.00	0.00	-0.00	]
C [	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.09	0.00	0.00	0.00	0.00	0.01	0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.10	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	1627	1636	1577	1650	1609	1648	1649	1583	1605	1542	1630	1582	1545	1873	1463	1383	1007	830	972	1314	1456	1426	1384	1478	1865	1089	4081	0	6496	1	5971	5130	926	2137	2006	1732	1587	1538	1576	1556	1551	1540	1565	1584	1637	1529	1573	1569	1605	1550	]
C [	1691	1598	1699	1660	1639	1671	1662	1653	1572	1735	1694	1768	1945	1620	1670	2102	1296	988	1482	1521	1795	1658	1667	1714	1332	2504	372	0	2	1	39	149	1495	1401	1541	1710	1588	1660	1619	1577	1566	1633	1609	1647	1604	1623	1597	1628	1606	1617	]
G [	1751	1707	1776	1711	1735	1802	1719	1807	1852	1842	1806	1811	1754	1751	1927	1579	1479	3039	2620	2012	1979	2076	2148	1805	1949	2037	105	6500	0	0	9	925	3556	2341	1806	1628	1833	1732	1747	1858	1853	1842	1810	1718	1780	1888	1810	1764	1785	1788	]
T [	1432	1560	1449	1480	1518	1380	1471	1458	1472	1382	1371	1340	1257	1257	1441	1437	2719	1644	1427	1654	1271	1341	1302	1504	1355	871	1943	1	3	6499	482	297	524	622	1148	1431	1493	1571	1559	1510	1531	1486	1517	1552	1480	1461	1521	1540	1505	1546	]

Hypothetical CWM

A [	-0.00	0.00	0.00	-0.00	0.02	-0.04	0.08	-0.06	0.05	0.03	-0.02	0.00	-0.00	-0.00	-0.00	]
C [	0.02	0.01	0.01	0.02	0.03	-0.03	-0.03	-0.02	-0.02	-0.01	0.02	0.01	0.01	0.01	0.01	]
G [	0.02	0.02	0.01	0.02	-0.04	0.09	-0.04	-0.04	-0.04	0.01	0.03	0.02	0.01	0.01	0.01	]
T [	-0.00	-0.00	0.00	-0.00	0.01	-0.02	-0.04	0.10	0.01	-0.02	-0.01	-0.02	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 351

CWM

PFM

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000782.1	GATA1	ENCSR000EFT	K562	Homo sapiens	MA0140.3
BP000784.1	GATA1	ENCSR000EXP	erythroblast	Homo sapiens	MA0140.3
BP000785.1	GATA1	ENCSR000EXR	erythroblast	Homo sapiens	MA0140.3