JASPAR - GATA1 - BP000784.1

This page shows detailed deep learning-derived predictions and motifs for GATA1 in erythroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA1
Model ID:	BP000784.1
Cell line/tissue:	erythroblast
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0140.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15976
Source:	ENCSR000EXP
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 25703

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.11	0.00	0.00	0.00	0.00	-0.00	]
C [	0.00	0.00	0.00	0.01	-0.00	0.00	0.00	0.00	0.10	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.00	]
T [	0.00	0.00	0.00	-0.00	0.03	0.06	0.00	0.10	-0.00	0.02	-0.00	0.00	]

Frequency matrix

A [	6763	6492	6599	6647	6468	6442	6387	6786	6423	6733	6386	7126	7197	6626	6332	5192	3091	2733	1249	1954	25674	9	6	8265	4101	5821	6918	6371	6206	6348	7264	6388	7234	10729	6313	6635	5852	5749	6002	6169	6323	6788	6576	6513	6276	6599	6356	6699	6601	6675	]
C [	6258	6244	6180	6004	6410	6374	6240	6350	6583	6475	6824	6449	6026	6266	5815	6473	7925	12691	2604	40	13	3	25688	278	7326	6918	6174	6877	7100	6743	6992	9823	11416	5630	5891	6501	6610	6382	6568	6571	6642	6330	6275	5942	6386	6193	6267	6063	6131	6234	]
G [	5909	5882	5842	5926	6042	5837	5913	5795	5976	5602	5674	5609	5749	5420	5794	5184	5077	5204	497	36	12	5	6	545	8909	4259	5672	5749	5620	6057	5558	5273	3567	5105	7871	6178	5721	6775	6139	5706	6107	5737	5721	5970	6052	5822	6069	6027	5880	5972	]
T [	6773	7085	7082	7126	6783	7050	7163	6772	6721	6893	6819	6519	6731	7391	7762	8854	9610	5075	21353	23673	4	25686	3	16615	5367	8705	6939	6706	6777	6555	5889	4219	3486	4239	5628	6389	7520	6797	6994	7257	6631	6848	7131	7278	6989	7089	7011	6914	7091	6822	]

Hypothetical CWM

A [	0.00	-0.01	-0.01	-0.01	0.01	0.11	-0.02	-0.02	0.02	0.01	0.00	0.00	0.00	]
C [	0.01	0.01	0.03	0.00	-0.06	-0.05	-0.07	0.10	-0.04	0.02	0.01	0.01	0.02	]
G [	0.01	0.01	0.02	-0.02	-0.03	-0.03	-0.05	-0.05	0.01	0.02	0.01	0.01	0.01	]
T [	0.00	0.01	-0.00	0.04	0.06	-0.06	0.10	-0.03	0.03	-0.00	0.01	0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 212

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 210

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 86

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 44

CWM

PFM

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000782.1	GATA1	ENCSR000EFT	K562	Homo sapiens	MA0140.3
BP000783.1	GATA1	ENCSR000EWM	K562	Homo sapiens	MA0140.3
BP000785.1	GATA1	ENCSR000EXR	erythroblast	Homo sapiens	MA0140.3