Detailed information of deep learning profile BP000782.1

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This page shows detailed deep learning-derived predictions and motifs for GATA1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA1
Model ID: BP000782.1
Cell line/tissue: K562
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
JASPAR ID: MA0140.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P15976  
Source: ENCSR000EFT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 0.00 0.07 0.00 0.04 0.02 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.08 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.00 -0.00 0.08 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5600 5548 5702 5556 5637 5764 5609 5600 5263 5697 5528 5339 5948 5023 4557 3681 3090 3643 4783 5193 5336 5296 5395 6607 4240 12774 5 19971 10 18013 15865 3700 7637 6406 6127 5771 5489 5259 5418 5257 5386 5418 5612 5684 5546 5674 5562 5697 5451 5676 ]
C [ 4481 4574 4567 4438 4587 4537 4365 4258 4617 4516 4711 5250 4397 4611 5947 4015 3047 4030 4230 4699 4422 4320 4400 3321 7179 628 8 12 48 70 565 4188 3741 4142 4688 4332 4381 4342 4299 4283 4546 4419 4567 4384 4455 4336 4539 4364 4470 4405 ]
G [ 4642 4609 4673 4735 4812 4566 4857 4914 5079 4975 5086 4885 5002 5193 4482 4377 8340 7371 5597 5318 5290 5593 4910 5325 5648 382 19998 9 10 135 2395 9935 6115 5068 4451 4788 4732 4877 5121 5133 5019 4851 4839 4709 5110 4792 4775 4782 4950 4852 ]
T [ 5299 5291 5080 5293 4986 5155 5191 5250 5063 4834 4697 4548 4675 5195 5036 7949 5545 4978 5412 4812 4974 4813 5317 4769 2955 6238 11 30 19954 1804 1197 2199 2529 4406 4756 5131 5420 5544 5184 5349 5071 5334 5004 5245 4911 5220 5146 5179 5151 5089 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.02 -0.03 0.07 -0.05 0.04 0.03 -0.01 0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.02 -0.03 -0.04 -0.01 -0.03 -0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.08 -0.04 -0.05 -0.04 0.00 0.02 0.01 0.01 ]
T [ 0.00 0.00 0.00 -0.00 0.01 -0.02 -0.02 0.08 0.01 -0.01 -0.01 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 62

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 22

CWM

PFM

     

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000783.1 GATA1 ENCSR000EWM K562 Homo sapiens MA0140.3
BP000784.1 GATA1 ENCSR000EXP erythroblast Homo sapiens MA0140.3
BP000785.1 GATA1 ENCSR000EXR erythroblast Homo sapiens MA0140.3
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