JASPAR - GATA1 - BP000785.1

This page shows detailed deep learning-derived predictions and motifs for GATA1 in erythroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA1
Model ID:	BP000785.1
Cell line/tissue:	erythroblast
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0140.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15976
Source:	ENCSR000EXR
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 4334

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.08	0.00	0.00	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.01	0.00	-0.00	-0.00	0.00	0.07	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	-0.00	]
T [	-0.00	0.00	0.00	-0.00	0.03	0.05	0.00	0.07	0.00	0.01	-0.00	0.00	-0.00	]

Frequency matrix

A [	1068	1028	1047	1089	1011	1064	1010	1012	990	1059	1046	1121	1083	1069	920	778	442	378	174	329	4318	8	6	1307	595	853	1027	931	923	889	1144	982	1097	1905	941	973	859	851	914	924	968	1015	962	968	947	1052	991	981	1062	1019	]
C [	1142	1145	1126	1056	1154	1070	1144	1170	1163	1173	1195	1110	1100	1107	1126	1180	1532	2292	613	19	8	0	4325	90	1265	1300	1233	1358	1311	1330	1227	1698	2094	952	1016	1257	1179	1134	1166	1191	1174	1149	1157	1091	1160	1061	1157	1117	1107	1117	]
G [	1038	1055	1040	1047	1088	1063	1095	1028	1074	1088	995	1026	1051	1015	1065	954	884	853	120	28	5	8	2	158	1724	830	1079	984	1085	1176	1029	1015	672	817	1505	1139	1047	1272	1167	1087	1126	1012	1051	1078	1074	1119	1066	1100	1041	1110	]
T [	1086	1106	1121	1142	1081	1137	1085	1124	1107	1014	1098	1077	1100	1143	1223	1422	1476	811	3427	3958	3	4318	1	2779	750	1351	995	1061	1015	939	934	639	471	660	872	965	1249	1077	1087	1132	1066	1158	1164	1197	1153	1102	1120	1136	1124	1088	]

Hypothetical CWM

A [	0.00	-0.00	-0.00	-0.02	-0.01	-0.02	0.01	0.08	-0.03	-0.01	0.01	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.01	0.01	0.01	0.02	0.01	-0.05	-0.03	-0.05	0.07	-0.04	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	0.02	-0.02	-0.02	-0.02	-0.02	-0.03	0.01	0.02	0.01	0.00	0.01	]
T [	-0.00	-0.00	0.00	0.01	-0.01	0.03	0.05	-0.05	0.07	-0.03	0.02	-0.01	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 29

CWM

PFM

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000782.1	GATA1	ENCSR000EFT	K562	Homo sapiens	MA0140.3
BP000783.1	GATA1	ENCSR000EWM	K562	Homo sapiens	MA0140.3
BP000784.1	GATA1	ENCSR000EXP	erythroblast	Homo sapiens	MA0140.3