Detailed information of deep learning profile BP000741.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000741.1
Cell line/tissue: GM12878
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR331HPA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.01 0.00 0.00 -0.00 0.00 0.06 0.04 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.06 -0.00 0.00 0.02 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.02 0.00 -0.00 ]

Frequency matrix

       
A [ 2199 2141 2100 2156 2359 2253 2183 2076 2009 2051 2173 2163 2185 2155 2111 2113 2114 1825 2762 2859 3778 988 2991 7 29 9572 8903 1709 764 1937 2815 1770 1837 1787 1908 2076 1874 2017 2175 2050 2077 1936 2052 1975 2071 1949 2013 1968 2075 2031 ]
C [ 2765 2776 2745 2842 2821 2859 2872 2803 2763 2838 2930 2838 2913 2757 2891 3099 2986 3005 2642 2769 1968 6408 6566 4 33 94 226 1000 2313 1772 2374 3357 2223 2852 3175 2793 2955 2869 2651 2785 2809 2783 2919 2829 2753 2774 2802 2659 2730 2810 ]
G [ 2942 2970 3062 2973 2831 2892 2937 3003 2979 2980 2778 2975 2835 2958 2911 2738 2720 3301 3088 2736 3213 2112 201 9778 9674 73 89 6893 937 4609 3503 2411 3389 2829 2604 2746 2952 3009 3015 3062 3108 3099 2939 2969 2991 3032 3000 3210 2965 2874 ]
T [ 1885 1904 1884 1820 1780 1787 1799 1909 2040 1922 1910 1815 1858 1921 1878 1841 1971 1660 1299 1427 832 283 33 2 55 52 573 189 5777 1473 1099 2253 2342 2323 2104 2176 2010 1896 1950 1894 1797 1973 1881 2018 1976 2036 1976 1954 2021 2076 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.04 -0.02 0.06 0.04 0.01 -0.01 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.03 -0.03 -0.01 0.00 0.01 -0.00 0.00 0.01 -0.00 ]
G [ 0.00 0.01 0.00 0.01 0.00 -0.01 0.07 0.06 -0.02 -0.04 0.02 -0.01 0.01 0.00 -0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.03 -0.05 -0.05 -0.03 -0.01 0.00 -0.03 0.02 -0.00 -0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1032

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 792

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 651

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 89

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages