Detailed information of deep learning profile BP000741.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000741.1
Cell line/tissue: GM12878
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR331HPA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.02 0.00 -0.00 0.06 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.02 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.04 0.06 0.00 -0.00 0.00 0.00 0.01 0.00 0.00 ]

Frequency matrix

       
A [ 2076 2021 1954 1976 2036 1976 2018 1881 1973 1797 1894 1950 1896 2010 2176 2104 2323 2342 2253 1099 1473 5777 189 573 52 55 2 33 283 832 1427 1299 1660 1971 1841 1878 1921 1858 1815 1910 1922 2040 1909 1799 1787 1780 1820 1884 1904 1885 ]
C [ 2874 2965 3210 3000 3032 2991 2969 2939 3099 3108 3062 3015 3009 2952 2746 2604 2829 3389 2411 3503 4609 937 6893 89 73 9674 9778 201 2112 3213 2736 3088 3301 2720 2738 2911 2958 2835 2975 2778 2980 2979 3003 2937 2892 2831 2973 3062 2970 2942 ]
G [ 2810 2730 2659 2802 2774 2753 2829 2919 2783 2809 2785 2651 2869 2955 2793 3175 2852 2223 3357 2374 1772 2313 1000 226 94 33 4 6566 6408 1968 2769 2642 3005 2986 3099 2891 2757 2913 2838 2930 2838 2763 2803 2872 2859 2821 2842 2745 2776 2765 ]
T [ 2031 2075 1968 2013 1949 2071 1975 2052 1936 2077 2050 2175 2017 1874 2076 1908 1787 1837 1770 2815 1937 764 1709 8903 9572 29 7 2991 988 3778 2859 2762 1825 2114 2113 2111 2155 2185 2163 2173 2051 2009 2076 2183 2253 2359 2156 2100 2141 2199 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.01 -0.00 0.02 -0.03 0.00 -0.01 -0.03 -0.05 -0.05 -0.03 -0.01 -0.00 -0.01 -0.00 ]
C [ 0.00 -0.00 0.00 0.01 -0.01 0.02 -0.04 -0.02 0.06 0.07 -0.01 0.00 0.01 0.00 0.01 0.00 ]
G [ -0.00 0.01 0.00 -0.00 0.01 0.00 -0.01 -0.03 -0.03 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.01 0.01 -0.01 0.01 0.04 0.06 -0.02 -0.04 -0.00 -0.00 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1032

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 792

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 651

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 89

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages