Detailed information of deep learning profile BP000734.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000734.1
Cell line/tissue: SK-N-SH
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BTG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 -0.00 0.03 0.00 0.00 0.07 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.06 0.05 -0.00 0.00 0.00 0.01 0.01 ]
G [ 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.01 0.02 0.01 0.00 -0.00 0.01 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.06 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.04 0.04 0.00 -0.00 -0.00 0.00 0.01 0.01 0.00 ]

Frequency matrix

       
A [ 6 5 2 6 8 3 1 3 4 6 8 8 5 5 4 4 6 6 7 2 4 18 0 1 0 0 0 1 0 2 2 3 3 6 7 12 0 1 2 0 2 1 0 3 3 2 0 5 4 9 ]
C [ 5 9 8 10 8 8 8 9 9 7 7 6 10 7 7 8 5 10 7 10 15 1 22 0 0 26 26 2 6 7 6 10 11 9 9 5 14 0 5 26 19 3 4 9 12 7 14 7 8 9 ]
G [ 8 6 9 5 6 7 9 10 7 8 6 4 5 7 9 4 9 5 10 6 1 5 0 0 0 0 0 1 19 1 7 4 7 3 6 9 2 1 0 0 3 9 16 4 2 7 4 7 9 5 ]
T [ 7 6 7 5 4 8 8 4 6 5 5 8 6 7 6 10 6 5 2 8 6 2 4 25 26 0 0 22 1 16 11 9 5 8 4 0 10 24 19 0 2 13 6 10 9 10 8 7 5 3 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.01 0.03 -0.03 0.00 -0.01 -0.02 -0.05 -0.05 -0.02 -0.02 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.02 0.00 -0.01 -0.03 -0.04 -0.04 -0.02 -0.01 -0.01 -0.01 ]
C [ 0.01 0.00 0.01 0.01 -0.01 0.03 -0.04 -0.02 0.07 0.08 -0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 -0.03 -0.00 0.06 0.05 -0.01 0.00 0.00 0.01 0.01 ]
G [ 0.00 0.02 0.01 0.00 0.01 0.00 -0.00 -0.03 -0.04 -0.02 0.06 0.03 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.00 -0.01 -0.02 -0.02 0.00 0.04 0.02 -0.00 0.00 0.01 ]
T [ -0.01 -0.01 0.00 0.00 -0.02 0.01 0.04 0.06 -0.03 -0.04 -0.00 -0.00 0.01 0.00 0.00 -0.01 -0.00 0.00 -0.01 0.01 0.04 0.03 -0.03 -0.03 -0.00 -0.00 0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 10759

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1019

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 917

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 21

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages