Detailed information of deep learning profile BP000729.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000729.1
Cell line/tissue: HeLa-S3
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BHS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.00 0.00 0.08 0.10 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.03 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.05 0.07 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 1570 1618 1541 1532 1504 1433 1509 1518 1416 1632 1740 1679 1770 1875 1698 1030 1303 4513 171 420 63 30 9 22 180 792 1263 1163 1466 1520 1547 1505 1518 1476 1498 1577 1636 1612 1532 1468 1485 1414 1455 1517 1480 1478 1502 1583 1492 1505 ]
C [ 3006 2869 2819 2849 2994 3070 2886 2968 2967 2841 2730 2646 2793 3065 2395 3245 4035 1140 6047 98 72 8693 8746 188 1742 3053 2650 3032 3112 2601 2644 2983 2905 2632 2808 2670 2809 2841 2833 2862 2796 2783 2864 2864 2824 2906 2856 2779 2704 2735 ]
G [ 2634 2626 2740 2707 2589 2620 2732 2544 2773 2765 2641 2882 2760 2318 3055 2311 1694 2393 983 211 52 19 1 6522 6100 1968 2501 2565 2791 2909 2954 2593 2673 2897 2774 2809 2692 2581 2665 2714 2719 2745 2682 2642 2708 2694 2759 2622 2728 2716 ]
T [ 1546 1643 1656 1668 1669 1633 1629 1726 1600 1518 1645 1549 1433 1498 1608 2170 1724 710 1555 8027 8569 14 0 2024 734 2943 2342 1996 1387 1726 1611 1675 1660 1751 1676 1700 1619 1722 1726 1712 1756 1814 1755 1733 1744 1678 1639 1772 1832 1800 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.03 -0.04 0.00 -0.01 -0.02 -0.06 -0.07 -0.04 -0.02 -0.01 -0.01 -0.00 ]
C [ -0.00 0.01 0.01 -0.01 0.03 -0.05 -0.02 0.08 0.10 -0.02 0.00 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 -0.01 0.01 0.01 -0.00 -0.03 -0.04 -0.02 0.07 0.04 -0.00 0.01 0.01 0.01 ]
T [ -0.00 0.01 0.01 -0.02 0.01 0.05 0.07 -0.05 -0.06 -0.01 -0.00 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 33

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages