Detailed information of deep learning profile BP000730.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000730.1
Cell line/tissue: H1
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BIW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.02 0.00 0.00 0.06 0.07 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.02 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.03 0.05 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 638 594 625 617 685 611 607 591 564 546 601 587 613 643 776 785 758 640 417 506 2123 11 68 8 0 0 0 45 264 483 422 541 603 603 578 584 593 548 589 596 642 591 524 563 558 546 565 567 594 616 ]
C [ 1173 1269 1170 1227 1131 1130 1142 1209 1220 1229 1223 1181 1095 1089 955 1041 1382 874 1192 1705 222 2677 8 6 3510 3513 26 603 1307 1014 1265 1369 1016 1025 1189 1130 1096 1200 1068 1158 1123 1152 1133 1118 1126 1139 1150 1119 1157 1079 ]
G [ 1044 1045 1129 1132 1105 1178 1152 1092 1115 1127 1043 1168 1234 1207 1280 1259 899 1394 1040 666 976 360 22 7 1 0 3190 2668 808 1140 1093 1103 1297 1284 1161 1146 1140 1114 1188 1093 1089 1114 1210 1160 1111 1134 1157 1169 1105 1185 ]
T [ 658 605 589 537 592 594 612 621 614 611 646 577 571 574 502 428 474 605 864 636 192 465 3415 3492 2 0 297 197 1134 876 733 500 597 601 585 653 684 651 668 666 659 656 646 672 718 694 641 658 657 633 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.01 0.01 -0.03 -0.00 -0.02 -0.03 -0.04 -0.05 -0.03 -0.01 -0.01 -0.01 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.02 -0.02 -0.01 0.06 0.07 -0.01 0.00 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.01 -0.00 -0.02 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 0.01 ]
T [ -0.01 -0.00 0.00 -0.02 0.00 0.03 0.05 -0.03 -0.05 -0.01 -0.01 0.00 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2039

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 53

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages