Detailed information of deep learning profile BP000730.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000730.1
Cell line/tissue: H1
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BIW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.05 0.03 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.02 0.05 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.06 0.00 0.00 0.02 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 633 657 658 641 694 718 672 646 656 659 666 668 651 684 653 585 601 597 500 733 876 1134 197 297 0 2 3492 3415 465 192 636 864 605 474 428 502 574 571 577 646 611 614 621 612 594 592 537 589 605 658 ]
C [ 1185 1105 1169 1157 1134 1111 1160 1210 1114 1089 1093 1188 1114 1140 1146 1161 1284 1297 1103 1093 1140 808 2668 3190 0 1 7 22 360 976 666 1040 1394 899 1259 1280 1207 1234 1168 1043 1127 1115 1092 1152 1178 1105 1132 1129 1045 1044 ]
G [ 1079 1157 1119 1150 1139 1126 1118 1133 1152 1123 1158 1068 1200 1096 1130 1189 1025 1016 1369 1265 1014 1307 603 26 3513 3510 6 8 2677 222 1705 1192 874 1382 1041 955 1089 1095 1181 1223 1229 1220 1209 1142 1130 1131 1227 1170 1269 1173 ]
T [ 616 594 567 565 546 558 563 524 591 642 596 589 548 593 584 578 603 603 541 422 483 264 45 0 0 0 8 68 11 2123 506 417 640 758 785 776 643 613 587 601 546 564 591 607 611 685 617 625 594 638 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.00 -0.01 -0.01 -0.05 -0.03 0.05 0.03 0.00 -0.02 0.00 -0.00 -0.01 ]
C [ 0.01 0.01 0.01 0.00 0.03 0.05 -0.02 -0.02 -0.02 -0.00 0.01 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.00 -0.01 0.07 0.06 -0.01 -0.02 0.02 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.03 -0.05 -0.04 -0.03 -0.02 -0.00 -0.03 0.01 -0.01 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2039

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 53

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages