Detailed information of deep learning profile BP000725.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000725.1
Cell line/tissue: IMR-90
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR513UQG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.12 -0.00 0.06 0.00 0.00 0.00 -0.00 0.03 0.01 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 -0.00 0.10 -0.00 0.12 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.09 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3497 3864 3493 3463 3488 3675 3389 3383 3558 4182 3704 3639 3663 3681 3308 3272 3691 2013 60 14565 31 396 30 2 9980 629 2087 3614 4249 3667 3333 3269 3063 3497 3890 3557 3240 3881 4761 4340 3507 3651 4114 3951 3917 3574 3581 3636 3947 3728 ]
C [ 4521 4159 4120 3983 4158 4080 4396 4710 4744 4335 4099 4576 4649 4329 3910 3531 3124 6559 15919 418 8716 278 101 18 1889 8935 6012 5339 4179 4178 4463 4796 4525 4017 4013 4601 5491 4947 4116 3999 4135 4331 4097 4123 4093 4096 4067 4249 4045 4226 ]
G [ 4364 4116 4000 4366 4720 4972 4519 4018 3889 4203 4979 4524 4107 4626 4548 6800 7709 3122 35 534 491 15348 31 16006 3124 2046 3445 3496 4357 4858 4316 4007 4222 4868 4922 4644 3824 3879 3846 3874 4098 4610 4446 4476 4160 4556 4407 4349 4337 4427 ]
T [ 3650 3893 4419 4220 3666 3305 3728 3921 3841 3312 3250 3293 3613 3396 4266 2429 1508 4338 18 515 6794 10 15870 6 1039 4422 4488 3583 3247 3329 3920 3960 4222 3650 3207 3230 3477 3325 3309 3819 4292 3440 3375 3482 3862 3806 3977 3798 3703 3651 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.01 0.02 -0.01 -0.02 0.08 -0.09 0.02 -0.03 -0.07 0.04 -0.04 -0.01 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 0.01 0.02 0.12 -0.03 0.10 -0.02 -0.01 -0.04 -0.00 0.05 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.04 0.00 -0.05 -0.00 -0.03 0.10 -0.03 0.12 0.02 -0.00 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.03 0.03 -0.06 -0.03 0.03 -0.09 0.09 -0.03 -0.02 0.02 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2348

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 908

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 684

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 40

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages