Detailed information of deep learning profile BP000722.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000722.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR145QNL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.09 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.08 -0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.07 -0.00 0.11 0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1483 1347 1314 1428 1617 1482 1283 1376 1354 1244 1262 1436 1620 1592 1535 1311 1336 1608 1811 1294 223 4 6669 3 1678 112 4 1791 593 860 1773 1290 1511 1287 1240 1362 1489 1596 1409 1256 1435 1636 1742 1569 1388 1484 1445 1416 1399 1347 ]
C [ 1802 1952 1935 1947 1855 1788 1747 1671 1699 2042 2176 2072 1930 1819 2099 2096 2022 1565 989 635 970 6691 16 5989 410 99 3 1338 2966 3025 1918 2152 1777 2021 2164 1786 1732 1769 2003 2161 2113 1958 1797 1827 2037 1866 1823 1852 1835 1928 ]
G [ 1821 1827 1789 1932 1943 1785 1758 2153 2483 2140 1828 1770 1928 2099 1836 1849 1787 2184 2990 4582 429 7 18 322 4608 82 6688 2728 1280 1464 1727 1865 2070 2046 1891 1922 2180 2042 1914 1868 1840 1779 1866 1861 1947 2031 2006 1950 2124 1976 ]
T [ 1602 1582 1670 1401 1293 1653 1920 1508 1172 1282 1442 1430 1230 1198 1238 1452 1563 1351 918 197 5086 6 5 394 12 6415 13 851 1869 1359 1290 1401 1350 1354 1413 1638 1307 1301 1382 1423 1320 1335 1303 1451 1336 1327 1434 1490 1350 1457 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 0.02 -0.02 -0.03 0.09 -0.08 0.02 -0.03 -0.04 0.04 -0.02 -0.01 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.01 0.11 -0.03 0.09 -0.01 0.01 -0.04 0.00 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 0.00 -0.04 0.01 -0.01 0.09 -0.03 0.11 0.01 0.00 0.02 0.01 0.02 0.01 ]
T [ 0.01 0.01 0.00 -0.01 -0.03 0.05 -0.05 -0.04 0.01 -0.08 0.08 -0.04 -0.02 0.02 -0.01 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 599

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 76

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 20

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000718.1 USF2 ENCSR000ECD H1 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages