Detailed information of deep learning profile BP000718.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000718.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000ECD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.11 -0.00 0.05 0.00 0.00 0.00 -0.00 0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.00 0.00 0.00 0.07 -0.00 0.11 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1373 1671 1393 1299 1402 1572 1348 1334 1453 1966 1620 1502 1359 1552 1272 1288 1905 756 7 7159 6 518 3 1 5999 124 891 1555 1873 1657 1267 1093 1148 1436 1653 1370 1190 1727 2463 2091 1350 1606 1910 1765 1858 1430 1430 1481 1725 1557 ]
C [ 2377 2143 2079 1945 2104 2041 2223 2460 2428 2136 1829 2211 2284 2085 1868 1614 1531 3068 7484 95 4462 427 11 3 516 5413 3313 2594 2066 2084 2140 2710 2419 1962 1946 2502 3283 2784 2000 1840 2033 2234 1984 2033 2024 2085 2035 2241 2072 2115 ]
G [ 2152 1891 1834 2185 2474 2549 2304 1892 1868 2051 2696 2578 2132 2426 2148 3643 3522 1496 0 117 511 6543 8 7487 753 515 1166 1700 2284 2361 2258 1848 2022 2472 2696 2391 1718 1731 1761 1877 2035 2265 2350 2369 1967 2387 2202 2173 2089 2258 ]
T [ 1590 1787 2186 2063 1512 1330 1617 1806 1743 1339 1347 1201 1717 1429 2204 947 534 2172 1 121 2513 4 7470 1 224 1440 2122 1643 1269 1390 1827 1841 1903 1622 1197 1229 1301 1250 1268 1684 2074 1387 1248 1325 1643 1590 1825 1597 1606 1562 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 0.01 -0.02 -0.03 0.07 -0.08 0.01 -0.03 -0.05 0.04 -0.04 -0.01 0.00 -0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 0.01 0.01 0.11 -0.03 0.08 -0.01 -0.00 -0.05 0.00 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.01 -0.06 0.00 -0.02 0.08 -0.03 0.11 0.01 -0.00 0.02 0.01 0.02 0.01 ]
T [ 0.00 -0.00 -0.00 -0.01 -0.03 0.03 -0.06 -0.02 0.02 -0.08 0.08 -0.03 -0.02 0.02 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 103

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000717.1 USF2 ENCSR000DZU GM12878 Homo sapiens MA0526.5
BP000719.1 USF2 ENCSR000ECW HeLa-S3 Homo sapiens MA0526.5
BP000720.1 USF2 ENCSR000EEF HepG2 Homo sapiens MA0526.5
BP000721.1 USF2 ENCSR000EHG K562 Homo sapiens MA0526.5
BP000722.1 USF2 ENCSR145QNL HepG2 Homo sapiens MA0526.5
BP000723.1 USF2 ENCSR229QAN WTC11 Homo sapiens MA0526.5
BP000724.1 USF2 ENCSR359NFW K562 Homo sapiens MA0526.5
BP000725.1 USF2 ENCSR513UQG IMR-90 Homo sapiens MA0526.5
BP000726.1 USF2 ENCSR563FBT A549 Homo sapiens MA0526.5
BP000727.1 USF2 ENCSR578KEN K562 Homo sapiens MA0526.5
Showing 10 profiles of page 1 from 2 pages