Detailed information of deep learning profile BP000707.1

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This page shows detailed deep learning-derived predictions and motifs for ELF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ELF1
Model ID: BP000707.1
Cell line/tissue: GM12878
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0473.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P32519  
Source: ENCSR841NDX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 0.00 -0.00 0.00 -0.00 0.00 0.03 0.03 0.00 -0.00 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 0.01 0.01 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
G [ -0.00 -0.00 -0.00 0.00 -0.00 0.04 0.04 0.00 -0.00 0.02 -0.00 0.01 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5581 5596 5633 5595 5439 5634 5610 5594 5730 5513 5519 5732 5828 5497 5651 5345 5435 5991 6551 10439 11365 7292 2686 12872 23 39 23558 23188 3026 2397 4717 6859 6146 7173 5383 5145 5256 5317 5388 5655 5539 5453 5598 5386 5480 5533 5360 5471 5365 5406 ]
C [ 6163 6100 6174 6101 6310 6328 6236 6387 6191 6185 6277 6152 5994 6421 6407 6509 6991 6411 5664 3950 3339 6400 13866 9616 0 10 24 45 2210 5196 4041 5404 6606 5162 6207 6524 5908 6141 6337 6002 6223 6158 6059 6194 6177 6221 6305 6231 6204 6224 ]
G [ 6941 6899 6864 6873 6977 6743 6865 6877 6667 6958 6914 6821 7046 6871 6606 6776 6703 6671 8065 5772 4799 5764 6381 1103 23603 23572 11 13 18312 2048 12138 8892 6858 6767 7550 6611 7149 7259 7080 6937 7066 7115 7028 7093 6946 6909 6964 6754 6993 6988 ]
T [ 4941 5031 4955 5057 4900 4921 4915 4768 5038 4970 4916 4921 4758 4837 4962 4996 4497 4553 3346 3465 4123 4170 693 35 0 5 33 380 78 13985 2730 2471 4016 4524 4486 5346 5313 4909 4821 5032 4798 4900 4941 4953 5023 4963 4997 5170 5064 5008 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.01 -0.00 0.01 -0.01 -0.01 0.03 0.03 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.01 0.02 0.03 -0.01 -0.01 -0.01 -0.01 0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 0.01 -0.00 0.04 0.04 -0.02 -0.02 0.02 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.01 -0.03 -0.02 -0.01 -0.00 0.00 -0.02 0.01 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1371

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1018

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 823

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 354

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 93

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 44

CWM

PFM

     

HCWM

13 profiles found for the same TF (ELF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000695.1 ELF1 ENCSR000BMB GM12878 Homo sapiens MA0473.4
BP000696.1 ELF1 ENCSR000BMD K562 Homo sapiens MA0473.4
BP000697.1 ELF1 ENCSR000BMZ HepG2 Homo sapiens MA0473.4
BP000698.1 ELF1 ENCSR000BPT A549 Homo sapiens MA0473.4
BP000699.1 ELF1 ENCSR000BSS MCF-7 Homo sapiens MA0473.4
BP000700.1 ELF1 ENCSR000BTA SK-N-SH Homo sapiens MA0473.4
BP000701.1 ELF1 ENCSR000BVH HCT116 Homo sapiens MA0473.4
BP000702.1 ELF1 ENCSR321VGW HepG2 Homo sapiens MA0473.4
BP000703.1 ELF1 ENCSR475SOC MCF-7 Homo sapiens MA0473.4
BP000704.1 ELF1 ENCSR502NRF MCF-7 Homo sapiens MA0473.4
Showing 10 profiles of page 1 from 2 pages