Detailed information of deep learning profile BP000687.1

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This page shows detailed deep learning-derived predictions and motifs for CREB1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREB1
Model ID: BP000687.1
Cell line/tissue: Ishikawa
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0018.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P16220  
Source: ENCSR000BUR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.01 0.02 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.00 0.01 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 -0.00 0.04 0.00 -0.00 0.06 -0.00 -0.00 0.00 -0.00 -0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.05 0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 871 839 889 878 880 799 834 898 867 887 858 847 850 819 786 790 753 724 791 847 719 921 777 683 1055 1336 1384 14 29 4466 3 292 274 1415 2290 714 1040 930 769 829 841 834 838 790 834 896 766 859 891 902 ]
C [ 1491 1440 1462 1458 1456 1473 1479 1428 1461 1426 1369 1396 1393 1422 1573 1422 1389 1684 1386 1705 1590 1612 1257 1326 1561 799 742 67 54 30 4469 102 1513 1903 662 1481 1477 1327 1420 1385 1409 1424 1308 1489 1378 1452 1515 1486 1376 1405 ]
G [ 1392 1457 1375 1417 1466 1431 1433 1377 1420 1439 1523 1459 1546 1539 1458 1657 1632 1467 1726 1433 1510 1294 1872 1794 966 1585 2328 13 4308 71 39 4151 190 839 1045 1434 1242 1656 1607 1566 1593 1546 1649 1517 1630 1434 1503 1466 1491 1408 ]
T [ 858 876 886 859 810 909 866 909 864 860 862 910 823 832 795 743 838 737 709 627 793 785 706 809 1030 892 158 4518 221 45 101 67 2635 455 615 983 853 699 816 832 769 808 817 816 770 830 828 801 854 897 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.01 0.02 -0.03 -0.01 0.06 -0.04 -0.00 -0.01 0.02 0.03 -0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 -0.01 0.02 -0.03 -0.03 0.07 -0.04 0.01 0.02 -0.02 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.00 0.01 -0.04 0.04 -0.00 -0.03 0.07 -0.03 -0.01 0.01 -0.00 -0.00 0.01 0.01 ]
T [ -0.00 0.00 0.01 0.01 -0.01 0.05 0.02 -0.01 -0.00 -0.04 0.04 -0.01 -0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 335

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 167

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 131

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 46

CWM

PFM

     

HCWM

13 profiles found for the same TF (CREB1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000681.1 CREB1 ENCSR000BRA A549 Homo sapiens MA0018.5
BP000682.1 CREB1 ENCSR000BRB A549 Homo sapiens MA0018.5
BP000683.1 CREB1 ENCSR000BRC A549 Homo sapiens MA0018.5
BP000684.1 CREB1 ENCSR000BSN H1 Homo sapiens MA0018.5
BP000685.1 CREB1 ENCSR000BSO K562 Homo sapiens MA0018.5
BP000686.1 CREB1 ENCSR000BUF GM12878 Homo sapiens MA0018.5
BP000688.1 CREB1 ENCSR000BVL HepG2 Homo sapiens MA0018.5
BP000689.1 CREB1 ENCSR112ALD HepG2 Homo sapiens MA0018.5
BP000690.1 CREB1 ENCSR214ZAV GM23338 Homo sapiens MA0018.5
BP000691.1 CREB1 ENCSR331ORD HepG2 Homo sapiens MA0018.5
Showing 10 profiles of page 1 from 2 pages