Detailed information of deep learning profile BP000683.1

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This page shows detailed deep learning-derived predictions and motifs for CREB1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREB1
Model ID: BP000683.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0018.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P16220  
Source: ENCSR000BRC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.02 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.04 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 16 16 11 11 19 12 19 14 20 21 15 20 15 11 11 7 20 12 4 3 53 2 2 3 1 55 8 16 31 11 15 14 6 9 10 15 14 14 11 22 14 14 17 19 12 14 13 18 9 17 ]
C [ 11 10 16 17 13 12 13 5 12 12 11 12 12 11 12 21 5 17 2 1 0 4 0 0 55 0 4 28 5 14 12 8 17 15 17 12 15 11 11 14 8 5 18 8 11 11 17 18 18 15 ]
G [ 10 18 7 13 7 21 6 18 11 7 13 11 13 22 10 10 17 15 0 50 0 3 54 0 0 1 1 4 14 17 13 17 14 14 14 12 13 15 22 5 12 17 5 11 18 14 16 7 11 12 ]
T [ 19 12 22 15 17 11 18 19 13 16 17 13 16 12 23 18 14 12 50 2 3 47 0 53 0 0 43 8 6 14 16 17 19 18 15 17 14 16 12 15 22 20 16 18 15 17 10 13 18 12 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.00 -0.01 -0.01 0.02 -0.02 -0.01 -0.00 0.00 0.02 -0.01 0.00 0.01 -0.01 ]
C [ 0.00 0.01 -0.00 0.00 0.01 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.02 0.00 0.01 -0.00 0.01 ]
G [ 0.00 0.00 0.01 0.00 -0.01 0.01 -0.00 -0.02 0.04 -0.02 -0.02 0.01 -0.01 -0.01 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 0.02 0.01 -0.01 0.00 -0.02 0.02 -0.01 -0.02 0.01 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 148

CWM

PFM

     

HCWM

13 profiles found for the same TF (CREB1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000681.1 CREB1 ENCSR000BRA A549 Homo sapiens MA0018.5
BP000682.1 CREB1 ENCSR000BRB A549 Homo sapiens MA0018.5
BP000684.1 CREB1 ENCSR000BSN H1 Homo sapiens MA0018.5
BP000685.1 CREB1 ENCSR000BSO K562 Homo sapiens MA0018.5
BP000686.1 CREB1 ENCSR000BUF GM12878 Homo sapiens MA0018.5
BP000687.1 CREB1 ENCSR000BUR Ishikawa Homo sapiens MA0018.5
BP000688.1 CREB1 ENCSR000BVL HepG2 Homo sapiens MA0018.5
BP000689.1 CREB1 ENCSR112ALD HepG2 Homo sapiens MA0018.5
BP000690.1 CREB1 ENCSR214ZAV GM23338 Homo sapiens MA0018.5
BP000691.1 CREB1 ENCSR331ORD HepG2 Homo sapiens MA0018.5
Showing 10 profiles of page 1 from 2 pages