Detailed information of deep learning profile BP000680.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F2
Model ID: BP000680.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1111.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P24468  
Source: ENCSR338MMB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 0.04 0.04 0.01 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.05 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.04 0.00 -0.00 -0.00 0.00 0.02 0.01 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 2343 2277 2219 2422 2371 2303 2351 2231 2170 2128 2333 2210 2353 2689 2435 2048 2007 1580 1583 1456 12 135 9179 162 11 1 748 1639 1886 2039 2100 2052 1973 2043 2046 2217 2232 2191 2236 2139 2299 2228 2218 2235 2387 2297 2221 2190 2320 2337 ]
C [ 2376 2401 2602 2503 2527 2520 2360 2419 2372 2477 2437 2752 2799 2444 2249 2273 2432 4098 3524 3424 133 4 121 9288 9419 3189 3908 1514 1931 2272 2395 2529 3198 3130 2933 2499 2406 2553 2484 2509 2413 2548 2541 2561 2418 2489 2416 2553 2469 2408 ]
G [ 2307 2312 2307 2238 2122 2246 2413 2446 2468 2361 2230 2095 2139 2109 2833 3093 2465 1586 1586 1827 25 9315 151 0 1 2 618 2216 3605 3110 2500 2216 1966 1858 1954 2213 2352 2342 2149 2267 2199 2244 2210 2233 2136 2235 2221 2187 2155 2182 ]
T [ 2427 2463 2325 2290 2433 2384 2329 2357 2443 2487 2453 2396 2162 2211 1936 2039 2549 2190 2761 2747 9284 0 3 4 23 6262 4180 4085 2032 2033 2459 2657 2317 2423 2521 2525 2464 2368 2585 2539 2543 2434 2485 2425 2513 2433 2596 2524 2510 2527 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.00 -0.02 0.02 0.03 0.01 -0.01 -0.04 -0.01 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.01 0.00 0.04 0.04 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.05 0.01 -0.04 -0.02 -0.01 -0.00 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.01 0.04 -0.04 -0.03 -0.01 -0.01 0.03 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 94

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 85

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 84

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 66

CWM

PFM

     

HCWM

4 profiles found for the same TF (NR2F2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000676.1 NR2F2 ENCSR000BRS K562 Homo sapiens MA1111.2
BP000677.1 NR2F2 ENCSR000BUY MCF-7 Homo sapiens MA1111.2
BP000678.1 NR2F2 ENCSR000BVM HepG2 Homo sapiens MA1111.2
BP000679.1 NR2F2 ENCSR168SMX liver Homo sapiens MA1111.2
Showing 4 profiles of page 1 from 1 pages
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