Detailed information of deep learning profile BP000679.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F2
Model ID: BP000679.1
Cell line/tissue: liver
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1111.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P24468  
Source: ENCSR168SMX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.00 0.00 -0.00 -0.00 0.05 0.05 0.01 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 0.02 0.01 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 3586 3503 3502 3725 3582 3522 3476 3409 3361 3287 3506 3339 3469 3964 3693 3166 3177 2347 2375 2202 30 209 13844 266 16 9 1027 2356 2741 3014 3293 2939 2759 2970 3102 3280 3363 3280 3262 3230 3552 3364 3401 3403 3479 3440 3377 3391 3438 3590 ]
C [ 3857 3747 4027 3791 3910 3858 3718 3777 3709 3829 3871 4237 4146 3821 3717 3936 4088 6003 5466 5334 208 24 318 14293 14539 4571 5960 2325 2886 3499 3712 4341 5497 4874 4420 3913 3773 3910 3869 3913 3803 3863 4027 3948 3780 3916 3882 3931 3804 3719 ]
G [ 3452 3526 3533 3522 3320 3537 3750 3724 3749 3681 3507 3299 3295 3498 4053 4427 3537 2659 2666 2828 46 14341 402 1 1 9 946 3247 5343 5298 3904 3355 2841 2785 3104 3522 3670 3661 3465 3549 3414 3501 3385 3330 3401 3438 3374 3327 3507 3428 ]
T [ 3682 3801 3515 3539 3765 3660 3633 3667 3758 3780 3693 3702 3667 3294 3114 3048 3775 3568 4070 4213 14293 3 13 17 21 9988 6644 6649 3607 2766 3668 3942 3480 3948 3951 3862 3771 3726 3981 3885 3808 3849 3764 3896 3917 3783 3944 3928 3828 3840 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.00 -0.03 0.01 0.04 0.01 -0.01 -0.04 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.02 0.01 0.01 0.02 -0.01 0.00 0.05 0.05 0.03 0.02 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.06 0.01 -0.04 -0.02 -0.01 -0.00 0.01 0.01 0.02 0.01 ]
T [ -0.00 0.00 0.00 0.01 0.04 -0.05 -0.03 -0.02 -0.02 0.03 0.01 0.01 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4844

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 708

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 506

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 28

CWM

PFM

     

HCWM

4 profiles found for the same TF (NR2F2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000676.1 NR2F2 ENCSR000BRS K562 Homo sapiens MA1111.2
BP000677.1 NR2F2 ENCSR000BUY MCF-7 Homo sapiens MA1111.2
BP000678.1 NR2F2 ENCSR000BVM HepG2 Homo sapiens MA1111.2
BP000680.1 NR2F2 ENCSR338MMB liver Homo sapiens MA1111.2
Showing 4 profiles of page 1 from 1 pages
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