Detailed information of deep learning profile BP000635.1

  1. Home
  2. Deep Learning Profile > BP000635.1
This page shows detailed deep learning-derived predictions and motifs for USF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000635.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BJB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.15 -0.00 0.08 0.00 0.00 0.00 -0.00 0.05 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 0.00 0.10 0.00 0.15 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.01 0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2469 2411 2467 2327 2231 2305 2614 2214 2158 2328 2530 2245 2133 2291 2992 2526 2457 2399 2582 2173 2226 3018 1400 45 10268 38 1009 45 30 8439 386 1422 2406 3064 2473 2158 2063 2060 2371 2635 2237 2080 2749 3575 3134 2230 2446 2948 2802 2797 ]
C [ 3409 3529 3211 3362 3387 3235 2926 2926 2818 3047 2763 3215 3417 3383 3068 2773 3046 3202 2936 2721 2294 1942 4561 11047 257 7041 520 63 54 672 7367 4593 3787 2932 2867 3049 3503 3276 2778 2757 3454 4265 3802 2878 2655 2925 3132 2871 2794 2822 ]
G [ 2961 2817 2945 2998 2949 3190 2882 2875 3253 3472 3692 3307 2840 2776 3015 3803 3568 3110 3583 3093 5163 5370 2322 72 407 561 9630 59 11078 1743 1168 1864 2415 3179 3691 3198 2903 2981 3490 3807 3406 2646 2579 2679 2753 3052 3387 3278 3355 2970 ]
T [ 2340 2422 2556 2492 2612 2449 2757 3164 2950 2332 2194 2412 2789 2729 2104 2077 2108 2468 2078 3192 1496 849 2896 15 247 3539 20 11012 17 325 2258 3300 2571 2004 2148 2774 2710 2862 2540 1980 2082 2188 2049 2047 2637 2972 2214 2082 2228 2590 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 -0.02 -0.03 0.10 -0.10 0.03 -0.04 -0.07 0.06 -0.04 -0.01 0.00 0.00 0.00 ]
C [ 0.02 0.02 0.02 0.03 0.01 0.02 0.15 -0.03 0.12 -0.01 0.00 -0.05 0.00 0.07 0.03 0.02 0.02 0.01 ]
G [ 0.01 0.02 0.02 0.03 0.05 0.01 -0.05 0.01 -0.02 0.12 -0.03 0.15 0.02 -0.00 0.03 0.02 0.02 0.02 ]
T [ 0.00 -0.00 -0.00 -0.01 -0.03 0.05 -0.07 -0.03 0.03 -0.10 0.11 -0.03 -0.03 0.03 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 554

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 366

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages