Detailed information of deep learning profile BP000634.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000634.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BIU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 0.10 -0.00 0.00 -0.00 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.18 -0.00 0.03 0.00 0.00 0.00 -0.00 0.05 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.04 -0.00 0.00 -0.00 0.00 0.13 -0.00 0.18 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.01 0.00 0.11 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5806 5548 5935 5495 5684 5366 5166 5278 5825 5259 5132 5499 5857 5249 4986 5493 6704 6027 5781 5417 5466 5483 5457 6713 2425 27 23752 29 238 67 5 17580 725 3810 5965 6073 5723 5093 4837 4968 5713 6302 5480 5030 6275 7858 6744 5487 5853 6834 ]
C [ 6968 6770 6937 7278 7004 7299 7289 6889 6708 6186 5796 6205 6185 6595 7388 7110 6235 5728 6572 6526 6193 5169 4771 3598 7753 24727 262 6949 1035 54 4 2266 15993 10382 7115 6515 6680 6385 7286 6835 6102 5799 7454 8879 7721 6071 5958 6113 6545 6062 ]
G [ 5929 6360 6108 5911 5813 5751 5931 6429 5801 5578 6559 7130 7365 6677 5661 5691 6490 7915 7203 6133 6989 6990 10682 13096 3373 2 256 4065 23477 111 24744 3975 1770 3370 4662 6648 6861 6538 5793 6395 6840 7543 6702 5400 5480 5611 5779 6214 6647 6630 ]
T [ 6055 6080 5778 6074 6257 6342 6372 6162 6424 7735 7271 5924 5351 6237 6723 6464 5329 5088 5202 6682 6110 7116 3848 1351 11207 2 488 13715 8 24526 5 937 6270 7196 7016 5522 5494 6742 6842 6560 6103 5114 5122 5449 5282 5218 6277 6944 5713 5232 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 0.03 -0.02 -0.02 0.11 -0.12 0.03 -0.05 -0.07 0.06 -0.05 -0.01 0.00 -0.00 0.00 ]
C [ 0.02 0.02 0.02 0.03 0.01 0.03 0.18 -0.03 0.14 0.02 -0.00 -0.06 0.00 0.08 0.04 0.03 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.04 0.07 0.01 -0.07 0.00 0.01 0.13 -0.02 0.18 0.03 -0.00 0.02 0.02 0.02 0.02 ]
T [ 0.00 -0.00 -0.00 -0.01 -0.04 0.05 -0.07 -0.04 0.03 -0.11 0.11 -0.03 -0.03 0.04 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 417

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 75

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages