Detailed information of deep learning profile BP000633.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000633.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BHX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.13 -0.00 0.07 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 0.00 0.10 -0.00 0.14 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.11 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1648 1610 1700 1596 1483 1551 1821 1524 1495 1619 1735 1503 1499 1549 2029 1817 1609 1523 1658 1466 1376 2205 836 13 7300 9 497 4 0 5908 84 937 1678 2074 1673 1467 1376 1346 1626 1782 1523 1405 1868 2506 2150 1519 1713 1995 1924 1926 ]
C [ 2384 2449 2263 2352 2436 2263 2049 2032 1965 2037 2026 2244 2367 2380 2145 1820 2194 2304 2103 2008 1752 1624 3174 7648 102 4696 303 13 11 578 5825 3278 2636 2002 2059 2099 2506 2335 1926 1913 2380 3020 2652 2002 1829 2033 2168 2018 1924 1977 ]
G [ 2054 1909 1927 2033 1993 2173 1921 1895 2202 2385 2442 2248 1874 1858 2058 2642 2477 2103 2513 2081 3522 3205 1434 17 167 353 6880 4 7667 906 397 1031 1595 2170 2431 2128 1990 1942 2410 2595 2315 1727 1746 1753 1837 2086 2293 2246 2264 1984 ]
T [ 1597 1715 1793 1702 1771 1696 1892 2232 2021 1642 1480 1688 1943 1896 1451 1404 1403 1753 1409 2128 1033 649 2239 5 114 2625 3 7662 5 291 1377 2437 1774 1437 1520 1989 1811 2060 1721 1393 1465 1531 1417 1422 1867 2045 1509 1424 1571 1796 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 0.02 -0.01 -0.03 0.09 -0.08 0.02 -0.04 -0.06 0.06 -0.04 -0.01 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.02 0.02 0.00 0.01 0.13 -0.04 0.11 -0.02 0.01 -0.05 -0.00 0.06 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.01 -0.05 0.01 -0.03 0.11 -0.04 0.14 0.01 -0.01 0.02 0.01 0.02 0.01 ]
T [ -0.00 0.00 -0.00 -0.01 -0.03 0.04 -0.06 -0.02 0.02 -0.09 0.11 -0.03 -0.02 0.03 0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3068

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1181

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 530

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 25

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages