Detailed information of deep learning profile BP000631.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000631.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BGI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 0.00 0.14 -0.00 0.11 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.09 -0.00 0.14 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.00 -0.00 0.09 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1698 1765 1759 1909 1755 1813 1685 1491 1567 2131 1869 1480 1510 1574 1454 1394 1725 1979 1827 1926 1474 1456 2001 2314 1655 366 3 8407 4 2036 160 2 1871 803 1005 2183 1519 1769 1442 1518 1470 1903 1950 1718 1439 1657 1957 2135 1866 1704 ]
C [ 2613 2476 2496 2523 2648 2356 2586 2629 2601 2425 2229 2156 2082 2097 2645 2932 2841 2390 2329 2667 2779 2649 1996 1386 802 1170 8412 12 7702 400 198 14 1627 3635 3921 2538 2814 2452 2752 2829 2381 2186 2243 2592 2844 2679 2561 2326 2355 2518 ]
G [ 2421 2391 2525 2390 2375 2373 2363 2315 2583 2335 2241 2359 2957 3374 2888 2349 2239 2661 2879 2360 2408 2349 2840 3629 5828 816 16 10 335 5988 130 8402 3969 2097 2060 2254 2326 2657 2605 2280 2581 2786 2764 2590 2400 2433 2366 2438 2428 2660 ]
T [ 1701 1801 1653 1611 1655 1891 1799 1998 1682 1542 2094 2438 1884 1388 1446 1758 1628 1403 1398 1480 1772 1979 1596 1104 148 6081 2 4 392 9 7945 15 966 1898 1447 1458 1774 1555 1634 1806 2001 1558 1476 1533 1750 1664 1549 1534 1784 1551 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 -0.03 -0.04 0.11 -0.11 0.03 -0.03 -0.07 0.04 -0.03 -0.01 -0.00 -0.00 0.00 ]
C [ 0.01 0.02 0.01 0.03 -0.01 0.02 0.14 -0.04 0.12 -0.03 0.01 -0.06 0.01 0.05 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.06 0.01 -0.05 0.00 -0.02 0.12 -0.04 0.14 0.02 0.01 0.03 0.02 0.02 0.01 ]
T [ 0.00 -0.00 0.00 -0.01 -0.04 0.05 -0.07 -0.04 0.02 -0.11 0.10 -0.04 -0.02 0.02 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 162

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 29

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages