Detailed information of deep learning profile BP000619.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000619.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DYC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.04 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 637 577 601 610 624 620 615 551 637 608 597 585 614 557 607 560 584 568 573 624 738 884 474 14 3114 2 16 400 27 169 441 541 545 460 572 595 580 533 619 600 639 574 609 546 618 607 604 575 623 631 ]
C [ 1164 1152 1165 1205 1108 1148 1203 1168 1139 1181 1146 1207 1134 1253 1199 1231 1234 1278 1133 1243 890 1126 1294 3486 25 3476 2 1135 60 463 1671 1279 1109 1263 1150 1187 1193 1084 1126 1097 1123 1210 1141 1197 1178 1135 1170 1182 1100 1149 ]
G [ 1142 1203 1212 1120 1225 1183 1132 1182 1189 1143 1220 1104 1173 1141 1128 1170 1134 1153 1281 1149 1450 1067 1564 29 365 5 3530 29 3300 2504 749 1091 1238 1150 1304 1195 1190 1302 1208 1263 1236 1129 1212 1201 1144 1152 1171 1181 1198 1166 ]
T [ 605 616 570 613 591 597 598 647 583 616 585 652 627 597 614 587 596 549 561 532 470 471 216 19 44 65 0 1984 161 412 687 637 656 675 522 571 585 629 595 588 550 635 586 604 608 654 603 610 627 602 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 -0.00 0.03 -0.03 0.01 -0.01 -0.02 -0.02 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 -0.04 0.04 -0.04 0.02 -0.02 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.03 0.02 -0.04 0.04 -0.04 0.03 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 -0.02 -0.02 -0.01 0.01 -0.03 0.02 -0.00 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1010

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 274

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages