Detailed information of deep learning profile BP000619.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000619.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DYC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.04 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 602 627 610 603 654 608 604 586 635 550 588 595 629 585 571 522 675 656 637 687 412 161 1984 0 65 44 19 216 471 470 532 561 549 596 587 614 597 627 652 585 616 583 647 598 597 591 613 570 616 605 ]
C [ 1166 1198 1181 1171 1152 1144 1201 1212 1129 1236 1263 1208 1302 1190 1195 1304 1150 1238 1091 749 2504 3300 29 3530 5 365 29 1564 1067 1450 1149 1281 1153 1134 1170 1128 1141 1173 1104 1220 1143 1189 1182 1132 1183 1225 1120 1212 1203 1142 ]
G [ 1149 1100 1182 1170 1135 1178 1197 1141 1210 1123 1097 1126 1084 1193 1187 1150 1263 1109 1279 1671 463 60 1135 2 3476 25 3486 1294 1126 890 1243 1133 1278 1234 1231 1199 1253 1134 1207 1146 1181 1139 1168 1203 1148 1108 1205 1165 1152 1164 ]
T [ 631 623 575 604 607 618 546 609 574 639 600 619 533 580 595 572 460 545 541 441 169 27 400 16 2 3114 14 474 884 738 624 573 568 584 560 607 557 614 585 597 608 637 551 615 620 624 610 601 577 637 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 -0.00 0.02 -0.03 0.01 -0.01 -0.02 -0.02 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.04 0.04 -0.04 0.02 -0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.02 0.02 -0.04 0.04 -0.04 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 -0.02 -0.02 -0.01 0.01 -0.03 0.03 -0.00 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1010

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 274

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages