Detailed information of deep learning profile BP000615.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000615.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DMP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.05 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.04 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 843 806 815 775 798 785 765 768 828 746 790 790 734 817 762 765 716 755 746 786 725 676 685 815 803 869 1001 508 304 2521 0 48 48 34 382 698 602 714 718 736 738 740 752 756 722 780 722 793 700 797 ]
C [ 1286 1316 1359 1409 1339 1396 1353 1391 1368 1400 1374 1375 1348 1383 1397 1350 1434 1407 1460 1464 1401 1480 1510 1329 1488 1205 917 2832 3824 23 4267 6 203 33 1962 1360 1600 1392 1425 1363 1334 1428 1353 1306 1362 1340 1427 1318 1425 1386 ]
G [ 1391 1387 1389 1358 1378 1349 1382 1381 1283 1404 1329 1327 1385 1364 1335 1433 1351 1358 1305 1277 1403 1402 1325 1511 1333 1488 1748 628 120 1286 3 4222 34 4181 1308 1086 1141 1398 1374 1390 1455 1364 1404 1484 1351 1392 1372 1362 1358 1360 ]
T [ 757 768 714 735 762 747 777 737 798 727 784 785 810 713 783 729 776 757 766 750 748 719 757 622 653 715 611 309 29 447 7 1 3992 29 625 1133 934 773 760 788 750 745 768 731 842 765 756 804 794 734 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 0.00 0.02 -0.05 0.01 -0.01 -0.03 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 -0.00 0.01 0.04 -0.04 0.05 -0.03 0.02 -0.03 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.02 0.02 -0.03 0.05 -0.04 0.04 0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.00 0.01 -0.05 0.03 -0.00 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 166

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages