Detailed information of deep learning profile BP000611.1

  1. Home
  2. Deep Learning Profile > BP000611.1
This page shows detailed deep learning-derived predictions and motifs for MYC in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000611.1
Cell line/tissue: endothelial cell of umbilical vein
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DLU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.06 0.00 0.10 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.10 0.00 0.07 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 283 307 306 309 307 301 318 304 291 311 309 287 332 293 274 255 327 339 328 324 243 64 1231 0 4 4 4 88 246 166 262 254 263 292 276 288 292 297 317 306 296 305 304 291 314 301 299 310 306 288 ]
C [ 466 456 456 476 436 450 491 467 454 496 470 522 489 468 471 523 494 501 421 300 1021 1436 4 1529 0 31 12 668 352 568 575 502 432 417 471 449 440 473 448 485 449 497 472 471 447 464 477 497 488 432 ]
G [ 487 460 494 461 476 469 455 466 537 434 447 443 437 461 476 454 471 397 477 667 183 11 210 0 1526 2 1502 496 383 403 415 477 510 547 510 481 505 459 482 439 476 456 469 451 455 455 437 430 424 502 ]
T [ 294 307 274 284 311 310 266 293 248 289 304 278 272 308 309 298 238 293 304 239 83 19 85 1 0 1493 12 278 549 393 278 297 325 274 273 312 293 301 283 300 309 272 285 317 314 310 317 293 312 308 ]

Hypothetical CWM

   
A [ 0.00 -0.01 0.01 0.01 0.00 0.05 -0.05 0.04 -0.02 -0.03 -0.02 -0.01 -0.00 -0.01 ]
C [ 0.01 0.01 -0.00 0.01 0.07 -0.08 0.10 -0.10 0.05 -0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.02 0.02 -0.04 0.05 -0.10 0.10 -0.08 0.07 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.00 -0.01 -0.02 -0.03 -0.01 0.04 -0.06 0.06 -0.00 0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1042

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 66

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages