Detailed information of deep learning profile BP000610.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000610.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DLR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.06 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.07 0.00 0.09 0.00 0.00 0.00 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.10 0.00 0.09 0.01 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 221 202 224 195 213 209 189 206 194 189 182 216 187 204 192 181 200 234 199 268 244 136 51 1005 0 2 20 6 95 228 164 219 186 198 207 180 225 213 200 199 199 207 215 206 219 187 196 220 217 208 ]
C [ 398 395 395 388 390 378 402 390 390 399 402 400 428 410 396 408 410 396 406 335 253 831 1127 0 1174 0 84 0 459 264 521 364 473 387 362 414 348 382 395 363 400 373 392 422 362 403 398 354 382 399 ]
G [ 360 394 358 375 365 377 359 365 389 391 403 350 342 368 374 395 353 379 389 410 555 172 3 105 0 1180 1 1174 411 333 260 370 339 386 420 367 399 383 363 418 365 380 378 363 387 371 376 373 375 363 ]
T [ 203 191 205 224 214 218 232 221 209 203 195 216 225 200 220 198 219 173 188 169 130 43 1 72 8 0 1077 2 217 357 237 229 184 211 193 221 210 204 224 202 218 222 197 191 214 221 212 235 208 212 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 -0.01 -0.00 0.06 -0.07 0.04 -0.02 -0.05 -0.03 -0.01 -0.01 -0.01 ]
C [ 0.01 0.00 -0.01 0.01 0.08 -0.10 0.09 -0.10 0.04 -0.07 0.02 -0.00 0.01 -0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.06 0.04 -0.11 0.10 -0.10 0.09 0.01 0.00 -0.00 0.01 ]
T [ -0.01 -0.01 -0.01 -0.02 -0.05 -0.01 0.03 -0.07 0.06 -0.00 -0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 413

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages