Detailed information of deep learning profile BP000610.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000610.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DLR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.01 0.09 0.00 0.10 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.09 0.00 0.07 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.06 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 212 208 235 212 221 214 191 197 222 218 202 224 204 210 221 193 211 184 229 237 357 217 2 1077 0 8 72 1 43 130 169 188 173 219 198 220 200 225 216 195 203 209 221 232 218 214 224 205 191 203 ]
C [ 363 375 373 376 371 387 363 378 380 365 418 363 383 399 367 420 386 339 370 260 333 411 1174 1 1180 0 105 3 172 555 410 389 379 353 395 374 368 342 350 403 391 389 365 359 377 365 375 358 394 360 ]
G [ 399 382 354 398 403 362 422 392 373 400 363 395 382 348 414 362 387 473 364 521 264 459 0 84 0 1174 0 1127 831 253 335 406 396 410 408 396 410 428 400 402 399 390 390 402 378 390 388 395 395 398 ]
T [ 208 217 220 196 187 219 206 215 207 199 199 200 213 225 180 207 198 186 219 164 228 95 6 20 2 0 1005 51 136 244 268 199 234 200 181 192 204 187 216 182 189 194 206 189 209 213 195 224 202 221 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 -0.00 -0.00 0.06 -0.07 0.03 -0.01 -0.05 -0.02 -0.01 -0.01 -0.01 ]
C [ 0.01 -0.00 0.00 0.01 0.09 -0.10 0.10 -0.11 0.04 -0.06 0.01 0.01 0.01 0.00 ]
G [ -0.00 0.01 -0.00 0.02 -0.07 0.04 -0.10 0.09 -0.10 0.08 0.01 -0.01 0.00 0.01 ]
T [ -0.01 -0.01 -0.01 -0.03 -0.05 -0.02 0.04 -0.07 0.06 -0.00 -0.01 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 413

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages