Detailed information of deep learning profile BP000609.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000609.1
Cell line/tissue: HeLa-S3
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DLN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.08 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.00 0.01 0.00 0.08 0.00 0.06 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 190 166 174 179 186 161 189 166 169 188 171 170 168 185 175 188 163 145 175 162 157 188 183 191 210 120 65 585 0 12 9 4 61 130 118 172 153 151 180 167 186 162 167 173 174 164 159 182 158 160 ]
C [ 290 284 305 294 278 291 290 274 324 297 262 293 277 288 299 292 314 326 281 297 313 308 338 262 163 636 824 3 912 0 59 7 378 272 365 292 305 275 274 286 294 274 275 267 304 288 297 282 282 298 ]
G [ 272 293 294 274 285 287 264 315 288 247 309 284 296 284 276 255 271 286 284 288 274 292 263 288 418 117 16 222 0 903 1 901 311 256 225 251 267 305 311 312 251 324 279 310 276 282 282 283 292 280 ]
T [ 163 172 142 168 166 176 172 160 134 183 173 168 174 158 165 180 167 158 175 168 171 127 131 174 124 42 10 105 3 0 846 3 165 257 207 200 190 184 150 150 184 155 194 165 161 181 177 168 183 177 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.00 -0.01 0.04 -0.04 0.02 -0.01 -0.03 -0.02 -0.01 -0.00 -0.01 ]
C [ -0.00 -0.00 -0.01 0.01 0.05 -0.08 0.08 -0.09 0.03 -0.05 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.04 0.03 -0.09 0.08 -0.08 0.06 0.00 -0.00 -0.00 0.00 ]
T [ -0.01 0.00 -0.01 -0.02 -0.03 -0.01 0.02 -0.04 0.05 -0.01 -0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 310

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 47

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages