Detailed information of deep learning profile BP000609.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000609.1
Cell line/tissue: HeLa-S3
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DLN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.06 0.00 0.08 0.00 0.01 -0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.08 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 177 183 168 177 181 161 165 194 155 184 150 150 184 190 200 207 257 165 3 846 0 3 105 10 42 124 174 131 127 171 168 175 158 167 180 165 158 174 168 173 183 134 160 172 176 166 168 142 172 163 ]
C [ 280 292 283 282 282 276 310 279 324 251 312 311 305 267 251 225 256 311 901 1 903 0 222 16 117 418 288 263 292 274 288 284 286 271 255 276 284 296 284 309 247 288 315 264 287 285 274 294 293 272 ]
G [ 298 282 282 297 288 304 267 275 274 294 286 274 275 305 292 365 272 378 7 59 0 912 3 824 636 163 262 338 308 313 297 281 326 314 292 299 288 277 293 262 297 324 274 290 291 278 294 305 284 290 ]
T [ 160 158 182 159 164 174 173 167 162 186 167 180 151 153 172 118 130 61 4 9 12 0 585 65 120 210 191 183 188 157 162 175 145 163 188 175 185 168 170 171 188 169 166 189 161 186 179 174 166 190 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.00 -0.01 0.05 -0.04 0.02 -0.01 -0.03 -0.02 -0.01 0.00 -0.01 ]
C [ 0.00 -0.00 -0.00 0.00 0.06 -0.08 0.08 -0.09 0.03 -0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.05 0.03 -0.09 0.08 -0.08 0.05 0.01 -0.01 -0.00 -0.00 ]
T [ -0.01 -0.00 -0.01 -0.02 -0.03 -0.01 0.02 -0.04 0.04 -0.01 -0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 310

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 47

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages