JASPAR - REST - BP000598.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000598.1
Cell line/tissue:	liver
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR893QWP
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 1874

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.10	-0.00	-0.00	0.17	0.00	-0.00	0.02	-0.01	-0.00	-0.00	0.12	-0.00	0.11	-0.00	-0.01	0.00	0.00	0.00	0.00	]
C [	0.00	0.00	-0.00	-0.00	0.00	0.13	0.00	0.00	0.03	0.00	0.20	0.11	-0.00	0.01	0.00	0.00	-0.00	0.09	0.00	-0.00	0.06	-0.00	0.02	0.03	0.01	]
G [	0.00	0.01	0.00	0.00	-0.00	-0.00	0.00	0.17	0.01	0.00	0.00	-0.00	0.00	-0.00	0.19	0.20	0.00	0.00	0.00	0.15	0.00	0.03	0.00	-0.00	0.00	]
T [	-0.00	-0.00	0.01	0.03	0.08	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.04	-0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	478	509	458	498	457	478	511	440	495	460	478	490	507	437	285	96	107	1654	55	195	1805	14	86	971	309	41	11	1666	67	1775	81	250	490	312	257	514	520	456	403	477	416	477	333	365	433	423	457	446	389	376	]
C [	462	447	491	504	477	492	469	469	440	460	464	446	383	441	218	300	1556	37	49	989	28	1847	1593	247	382	7	17	109	1420	36	19	1101	76	988	1176	678	467	418	563	506	598	507	630	577	554	503	530	498	506	508	]
G [	489	486	521	496	545	541	524	521	483	536	473	484	556	494	383	160	71	93	1729	423	19	9	22	211	127	1814	1828	24	268	14	1735	198	760	365	96	239	481	626	558	523	470	483	445	476	450	472	463	497	512	516	]
T [	445	432	404	376	395	363	370	444	456	418	459	454	428	502	988	1318	140	90	41	267	22	4	173	445	1056	12	18	75	119	49	39	325	548	209	345	443	406	374	350	368	390	407	466	456	437	476	424	433	467	474	]

Hypothetical CWM

A [	0.00	0.01	0.01	0.01	0.03	0.02	0.01	-0.05	0.00	0.10	-0.01	-0.01	0.17	-0.00	-0.03	0.05	0.00	-0.01	-0.01	0.13	-0.02	0.11	-0.00	-0.02	0.02	0.03	0.02	0.02	0.01	0.00	-0.00	0.00	]
C [	0.01	0.03	0.02	0.03	0.02	0.02	-0.01	0.05	0.14	0.03	0.02	0.07	-0.00	0.20	0.12	0.04	0.08	0.03	-0.05	0.03	0.13	0.05	-0.02	0.10	-0.04	0.05	0.06	0.05	0.03	0.03	0.03	0.02	]
G [	0.03	0.03	0.03	0.03	0.04	0.03	0.03	-0.00	-0.02	0.04	0.17	0.07	-0.00	-0.00	0.03	0.05	0.02	0.19	0.20	-0.02	0.04	-0.03	0.16	0.03	0.10	0.05	0.00	0.03	0.02	0.03	0.02	0.03	]
T [	0.01	0.00	0.00	0.00	-0.00	0.03	0.06	0.10	-0.00	-0.07	-0.04	0.05	-0.03	-0.03	0.07	0.04	0.09	-0.05	0.01	0.01	0.02	-0.01	-0.01	0.02	0.03	-0.02	0.01	-0.00	0.01	0.01	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1890

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1504

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1117

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1011

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 258

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 158

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 116

CWM

PFM

HCWM

Motif name: counts.neg_patterns.pattern_5

Num. of seqlets: 22

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000592.1	REST	ENCSR054JMQ	K562	Homo sapiens	MA0138.3
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3