Detailed information of deep learning profile BP000598.1

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This page shows detailed deep learning-derived predictions and motifs for REST in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000598.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR893QWP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.08 0.03 0.01 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.03 0.00 0.15 0.00 0.00 0.00 0.20 0.19 -0.00 0.00 -0.00 0.00 0.00 0.01 0.17 0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 ]
G [ 0.01 0.03 0.02 -0.00 0.06 -0.00 0.00 0.09 -0.00 0.00 0.00 0.01 -0.00 0.11 0.20 0.00 0.03 0.00 0.00 0.13 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.01 -0.00 0.11 -0.00 0.12 -0.00 -0.00 -0.01 0.02 -0.00 0.00 0.17 -0.00 -0.00 0.10 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 474 467 433 424 476 437 456 466 407 390 368 350 374 406 443 345 209 548 325 39 49 119 75 18 12 1056 445 173 4 22 267 41 90 140 1318 988 502 428 454 459 418 456 444 370 363 395 376 404 432 445 ]
C [ 516 512 497 463 472 450 476 445 483 470 523 558 626 481 239 96 365 760 198 1735 14 268 24 1828 1814 127 211 22 9 19 423 1729 93 71 160 383 494 556 484 473 536 483 521 524 541 545 496 521 486 489 ]
G [ 508 506 498 530 503 554 577 630 507 598 506 563 418 467 678 1176 988 76 1101 19 36 1420 109 17 7 382 247 1593 1847 28 989 49 37 1556 300 218 441 383 446 464 460 440 469 469 492 477 504 491 447 462 ]
T [ 376 389 446 457 423 433 365 333 477 416 477 403 456 520 514 257 312 490 250 81 1775 67 1666 11 41 309 971 86 14 1805 195 55 1654 107 96 285 437 507 490 478 460 495 440 511 478 457 498 458 509 478 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.01 -0.00 0.01 -0.02 0.03 0.02 -0.01 -0.01 0.02 0.01 0.01 -0.05 0.09 0.04 0.07 -0.03 -0.03 0.05 -0.04 -0.07 -0.00 0.10 0.06 0.03 -0.00 0.00 0.00 0.00 0.01 ]
C [ 0.03 0.02 0.03 0.02 0.03 0.00 0.05 0.10 0.03 0.16 -0.03 0.04 -0.02 0.20 0.19 0.02 0.05 0.03 -0.00 -0.00 0.07 0.17 0.04 -0.02 -0.00 0.03 0.03 0.04 0.03 0.03 0.03 0.03 ]
G [ 0.02 0.03 0.03 0.03 0.05 0.06 0.05 -0.04 0.10 -0.02 0.05 0.13 0.03 -0.05 0.03 0.08 0.04 0.12 0.20 -0.00 0.07 0.02 0.03 0.14 0.05 -0.01 0.02 0.02 0.03 0.02 0.03 0.01 ]
T [ 0.00 -0.00 0.00 0.01 0.02 0.02 0.03 0.02 -0.02 -0.00 0.11 -0.02 0.13 -0.01 -0.01 0.00 0.05 -0.03 -0.00 0.17 -0.01 -0.01 0.10 0.00 -0.05 0.01 0.02 0.03 0.01 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1890

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1504

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_5

Num. of seqlets: 22

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages