Detailed information of deep learning profile BP000595.1

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This page shows detailed deep learning-derived predictions and motifs for REST in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000595.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR867WPH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 -0.00 0.17 0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.12 -0.00 0.12 -0.00 -0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.11 0.00 0.00 0.03 0.00 0.20 0.10 -0.00 0.01 0.00 0.00 -0.00 0.08 0.00 -0.00 0.05 -0.00 0.03 0.03 ]
G [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.15 0.01 0.00 0.00 -0.00 0.00 -0.00 0.18 0.20 0.00 0.00 0.00 0.15 0.00 0.03 0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.03 0.07 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 433 449 445 474 409 436 473 414 445 419 453 458 444 382 265 74 95 1576 48 176 1725 10 59 930 266 30 12 1591 56 1698 64 252 452 266 250 496 486 414 361 485 368 451 310 340 376 379 437 423 371 355 ]
C [ 429 424 470 459 456 464 439 431 400 435 465 415 374 410 208 297 1453 21 45 945 9 1738 1526 224 340 6 4 86 1333 23 16 1010 66 954 1119 631 432 397 543 449 570 477 596 530 531 489 503 448 468 482 ]
G [ 484 469 483 466 525 506 497 503 464 509 426 460 516 481 378 166 69 87 1624 389 8 4 12 188 114 1704 1727 19 260 8 1644 193 713 361 81 211 461 616 529 489 441 448 419 463 434 436 424 480 505 494 ]
T [ 406 410 354 353 362 346 343 404 443 389 408 419 418 479 901 1215 135 68 35 242 10 0 155 410 1032 12 9 56 103 23 28 297 521 171 302 414 373 325 319 329 373 376 427 419 411 448 388 401 408 421 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.02 0.01 0.01 -0.06 0.00 0.09 -0.01 -0.02 0.18 -0.03 -0.03 0.05 -0.00 -0.01 -0.02 0.13 -0.02 0.12 0.00 -0.03 0.02 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.02 0.03 0.02 0.01 -0.02 0.04 0.12 0.03 0.02 0.07 -0.01 0.20 0.11 0.04 0.07 0.04 -0.07 0.03 0.11 0.03 -0.02 0.09 -0.03 0.05 0.05 0.04 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.03 0.02 -0.00 -0.02 0.02 0.16 0.06 -0.03 -0.00 0.02 0.04 0.01 0.18 0.20 -0.02 0.04 -0.04 0.16 0.03 0.08 0.04 0.00 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.02 0.06 0.09 -0.01 -0.06 -0.04 0.04 -0.04 -0.02 0.06 0.03 0.09 -0.05 0.01 -0.01 0.01 -0.01 -0.04 0.02 0.02 -0.03 0.00 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6621

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2853

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2696

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 916

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 754

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 39

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages