JASPAR - REST - BP000596.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000596.1
Cell line/tissue:	GM23338
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR871KYB
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 2867

Contribution weight matrix (CWM)

A [	-0.01	0.00	-0.01	0.01	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.04	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.07	0.02	-0.00	-0.01	]
C [	-0.00	-0.00	0.00	0.04	-0.00	0.22	0.00	0.00	-0.00	0.26	0.24	-0.00	-0.00	0.00	0.00	0.00	0.00	0.19	0.00	-0.00	0.00	0.00	0.01	0.01	]
G [	0.02	0.06	0.05	-0.00	0.08	-0.00	0.00	0.12	-0.00	0.00	0.00	0.01	-0.00	0.14	0.25	0.00	0.04	0.00	-0.00	0.11	0.00	-0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.01	-0.00	0.19	-0.00	0.14	-0.00	-0.00	-0.01	0.02	-0.00	-0.00	0.22	-0.01	-0.00	0.11	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	683	654	656	637	748	653	659	696	616	579	518	556	536	649	754	486	231	926	488	18	18	149	93	3	5	1720	816	135	6	12	496	114	115	360	1653	1199	701	690	664	711	643	757	665	624	639	599	577	598	677	695	]
C [	822	810	791	721	706	775	718	722	732	702	816	814	1014	788	334	104	549	1213	315	2746	8	414	38	2827	2813	206	216	23	3	14	643	2405	317	200	362	667	802	811	771	739	853	716	781	796	814	812	783	794	777	797	]
G [	790	761	758	802	778	809	902	934	746	1002	775	877	679	719	1051	1944	1700	83	1618	11	15	2276	184	3	3	463	347	2641	2848	12	1477	190	131	2023	651	552	782	673	683	754	712	722	766	714	766	789	733	772	687	690	]
T [	572	642	662	707	635	630	588	515	773	584	758	620	638	711	728	333	387	645	446	92	2826	28	2552	34	46	478	1488	68	10	2829	251	158	2304	284	201	449	582	693	749	663	659	672	655	733	648	667	774	703	726	685	]

Hypothetical CWM

A [	-0.00	0.00	0.00	-0.00	0.03	-0.05	0.05	0.02	-0.06	-0.09	0.05	-0.02	-0.04	-0.09	0.08	0.03	0.02	-0.02	-0.05	0.07	-0.07	-0.11	0.01	0.10	0.04	0.01	-0.01	-0.01	]
C [	0.02	0.03	0.03	0.03	-0.04	0.05	0.13	0.00	0.22	-0.00	0.07	-0.04	0.27	0.24	-0.02	0.06	0.01	-0.03	-0.01	0.07	0.20	0.07	-0.02	0.02	0.02	0.05	0.03	0.04	]
G [	0.03	0.03	0.04	0.07	0.09	0.09	-0.09	0.15	-0.05	0.01	0.16	0.05	-0.09	0.04	0.11	0.02	0.15	0.25	-0.07	0.09	0.03	0.03	0.13	0.05	-0.02	0.03	0.03	0.04	]
T [	-0.01	-0.01	-0.01	0.00	-0.01	0.03	0.02	-0.03	0.01	0.19	-0.13	0.15	-0.00	-0.02	-0.01	0.07	-0.04	-0.03	0.22	-0.05	-0.03	0.12	-0.01	-0.06	0.02	0.01	0.01	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1373

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 450

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 178

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 101

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000592.1	REST	ENCSR054JMQ	K562	Homo sapiens	MA0138.3
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3