Detailed information of deep learning profile BP000568.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000568.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR681NOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 -0.00 0.01 0.00 0.04 0.09 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.08 -0.00 0.02 0.02 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 -0.00 0.07 -0.00 0.02 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.10 0.08 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.02 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 513 544 552 620 582 556 495 529 567 557 563 484 457 493 528 495 508 535 641 562 409 1007 4 3 75 26 1010 295 1227 2127 33 622 476 458 481 524 508 540 588 566 521 532 554 520 537 527 567 577 521 588 ]
C [ 516 497 500 523 472 526 537 538 445 536 511 536 474 487 519 497 557 517 455 533 259 260 0 3 0 2049 132 881 894 2 678 781 574 650 520 560 533 584 557 504 528 555 579 593 514 527 496 520 525 540 ]
G [ 502 612 577 502 558 556 517 522 626 538 503 573 550 596 606 645 526 604 621 511 698 846 0 10 2011 8 775 10 15 12 322 262 515 394 601 520 559 497 490 498 583 470 493 457 530 539 543 494 530 515 ]
T [ 614 492 516 500 533 507 596 556 507 514 568 552 664 569 492 508 554 489 428 539 779 32 2141 2129 59 62 228 959 9 4 1112 480 580 643 543 541 545 524 510 577 513 588 519 575 564 552 539 554 569 502 ]

Hypothetical CWM

   
A [ 0.01 0.01 -0.00 -0.01 0.03 -0.02 -0.05 0.01 -0.01 0.01 0.01 0.06 0.09 -0.05 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 -0.00 -0.05 -0.04 -0.08 0.08 -0.04 0.03 0.03 -0.05 0.03 0.02 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 0.04 -0.06 -0.00 0.07 -0.04 0.06 -0.07 -0.05 -0.03 0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 0.01 -0.05 0.10 0.08 0.00 -0.01 -0.02 0.03 -0.05 -0.04 0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 74

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000554.1 CEBPB ENCSR000EEE HepG2 Homo sapiens MA0466.4
BP000555.1 CEBPB ENCSR000EEX HepG2 Homo sapiens MA0466.4
BP000556.1 CEBPB ENCSR000EFM IMR-90 Homo sapiens MA0466.4
BP000557.1 CEBPB ENCSR000EHE K562 Homo sapiens MA0466.4
BP000558.1 CEBPB ENCSR182OZC A549 Homo sapiens MA0466.4
BP000559.1 CEBPB ENCSR190VMK A549 Homo sapiens MA0466.4
BP000560.1 CEBPB ENCSR216GEB A549 Homo sapiens MA0466.4
BP000561.1 CEBPB ENCSR269IUA A549 Homo sapiens MA0466.4
BP000562.1 CEBPB ENCSR299ILN A549 Homo sapiens MA0466.4
BP000563.1 CEBPB ENCSR375BUB A549 Homo sapiens MA0466.4
Showing 10 profiles of page 2 from 3 pages