Detailed information of deep learning profile BP000562.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000562.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR299ILN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.02 0.00 0.00 0.00 -0.00 0.00 0.00 0.03 0.07 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.06 -0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.08 0.07 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5551 6678 5763 5767 5408 5512 5625 5581 6730 5691 5240 5468 6384 5307 5713 6017 6751 6508 4102 12178 7 1 3130 54 10471 4615 12780 20352 790 6448 4832 4428 6010 5087 5045 5447 5769 6402 5740 5534 5369 5418 5461 5647 5794 5775 6014 6599 5694 6492 ]
C [ 4187 4139 4120 4294 4359 4258 4079 5280 4057 4330 4222 4114 4188 4671 5369 4594 3777 4025 2696 2580 2 1 5 20306 2400 7985 7514 20 7216 5718 5146 6239 4468 5371 4557 5340 5082 4043 4129 5099 5316 4356 4242 4285 4246 4545 4091 4312 5340 4427 ]
G [ 5177 4185 5093 4955 4182 4184 5342 4190 4097 4913 4064 5234 4441 5446 4025 4535 5676 4655 6442 5161 4 234 12759 58 4432 146 77 59 2753 2507 4874 3297 4339 4139 4370 4192 4022 4340 5231 4061 4247 4036 5197 4998 4998 4195 4616 4144 4020 4071 ]
T [ 5555 5468 5494 5454 6521 6516 5424 5419 5586 5536 6944 5654 5457 5046 5363 5324 4266 5282 7230 551 20457 20234 4576 52 3167 7724 99 39 9711 5797 5618 6506 5653 5873 6498 5491 5597 5685 5370 5776 5538 6660 5570 5540 5432 5955 5749 5415 5416 5480 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.03 -0.03 -0.05 0.02 -0.01 0.01 0.01 0.05 0.07 -0.03 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 -0.03 -0.04 -0.07 0.06 -0.02 0.03 0.03 -0.04 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 -0.04 0.01 0.04 -0.02 0.05 -0.06 -0.04 -0.02 0.00 -0.00 0.01 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.03 0.08 0.07 0.01 -0.01 -0.02 0.02 -0.04 -0.03 0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4679

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2903

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1728

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 32

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages