Detailed information of deep learning profile BP000568.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000568.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR681NOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.02 -0.00 -0.00 0.00 0.08 0.10 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.02 -0.00 0.07 -0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.02 0.02 -0.00 0.08 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.09 0.04 0.00 0.01 -0.00 0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 502 569 554 539 552 564 575 519 588 513 577 510 524 545 541 543 643 580 480 1112 4 9 959 228 62 59 2129 2141 32 779 539 428 489 554 508 492 569 664 552 568 514 507 556 596 507 533 500 516 492 614 ]
C [ 515 530 494 543 539 530 457 493 470 583 498 490 497 559 520 601 394 515 262 322 12 15 10 775 8 2011 10 0 846 698 511 621 604 526 645 606 596 550 573 503 538 626 522 517 556 558 502 577 612 502 ]
G [ 540 525 520 496 527 514 593 579 555 528 504 557 584 533 560 520 650 574 781 678 2 894 881 132 2049 0 3 0 260 259 533 455 517 557 497 519 487 474 536 511 536 445 538 537 526 472 523 500 497 516 ]
T [ 588 521 577 567 527 537 520 554 532 521 566 588 540 508 524 481 458 476 622 33 2127 1227 295 1010 26 75 3 4 1007 409 562 641 535 508 495 528 493 457 484 563 557 567 529 495 556 582 620 552 544 513 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.03 -0.04 -0.05 0.03 -0.02 -0.01 0.00 0.08 0.10 -0.05 0.01 -0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.00 -0.03 -0.05 -0.07 0.06 -0.04 0.07 -0.00 -0.06 0.04 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.02 0.03 -0.05 0.03 0.03 -0.04 0.08 -0.08 -0.04 -0.05 -0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.05 0.09 0.06 0.01 0.01 -0.01 0.01 -0.05 -0.02 0.03 -0.01 -0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 74

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages