Detailed information of deep learning profile BP000565.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000565.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR447ZMS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 0.00 0.03 0.07 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.06 -0.00 0.01 0.01 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.03 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.07 0.07 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 6891 5867 5865 5610 5678 5895 5799 6919 5891 5407 5602 6542 5447 5692 6052 6901 6470 4247 12581 27 7 3001 68 10277 4626 13045 20912 801 6712 5087 4560 6305 5168 5184 5603 5963 6640 5957 5622 5636 5498 5639 5740 5931 5909 6217 6864 5971 6696 6266 ]
C [ 4275 4194 4449 4492 4382 4088 5416 4150 4420 4395 4306 4318 4737 5586 4814 3844 4141 2898 2729 7 0 8 20766 2590 8321 7874 32 7454 5830 5276 6425 4524 5475 4627 5611 5208 4111 4182 5316 5458 4595 4390 4363 4318 4766 4226 4392 5502 4530 4469 ]
G [ 4302 5399 5159 4267 4335 5605 4366 4190 5096 4226 5359 4613 5760 4213 4624 5928 4807 6744 5104 9 231 13822 92 4932 243 67 97 2999 2678 4988 3329 4518 4321 4615 4264 4165 4363 5432 4176 4411 4150 5297 5264 5118 4318 4761 4307 4133 4251 4865 ]
T [ 5632 5640 5627 6731 6705 5512 5519 5841 5693 7072 5833 5627 5156 5609 5610 4427 5682 7211 686 21057 20862 4269 174 3301 7910 114 59 9846 5880 5749 6786 5753 6136 6674 5622 5764 5986 5529 5986 5595 6857 5774 5733 5733 6107 5896 5537 5494 5623 5500 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.01 0.03 -0.03 -0.05 0.02 -0.02 0.01 0.01 0.05 0.07 -0.03 0.01 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.03 -0.04 -0.07 0.06 -0.02 0.03 0.02 -0.04 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 -0.04 0.01 0.04 -0.02 0.05 -0.06 -0.04 -0.02 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.01 0.00 0.01 -0.03 0.07 0.07 0.01 -0.01 -0.02 0.02 -0.05 -0.04 0.02 -0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4549

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1405

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 172

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 150

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000554.1 CEBPB ENCSR000EEE HepG2 Homo sapiens MA0466.4
BP000555.1 CEBPB ENCSR000EEX HepG2 Homo sapiens MA0466.4
BP000556.1 CEBPB ENCSR000EFM IMR-90 Homo sapiens MA0466.4
BP000557.1 CEBPB ENCSR000EHE K562 Homo sapiens MA0466.4
BP000558.1 CEBPB ENCSR182OZC A549 Homo sapiens MA0466.4
BP000559.1 CEBPB ENCSR190VMK A549 Homo sapiens MA0466.4
BP000560.1 CEBPB ENCSR216GEB A549 Homo sapiens MA0466.4
BP000561.1 CEBPB ENCSR269IUA A549 Homo sapiens MA0466.4
BP000562.1 CEBPB ENCSR299ILN A549 Homo sapiens MA0466.4
BP000563.1 CEBPB ENCSR375BUB A549 Homo sapiens MA0466.4
Showing 10 profiles of page 2 from 3 pages