Detailed information of deep learning profile BP000556.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000556.1
Cell line/tissue: IMR-90
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000EFM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.13 0.15 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 0.00 0.00 0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.00 0.03 0.04 -0.00 0.15 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 0.13 0.06 0.00 0.01 0.00 0.00 0.00 0.00 0.04 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6744 6669 6401 7032 7042 6573 7027 7275 7951 6658 7439 6605 7320 6591 6487 7711 7416 7056 8470 6936 6040 13452 120 109 9250 2286 15 3805 23301 23407 261 10168 7572 5479 6623 7177 6439 6490 7249 8146 6832 7328 6747 6265 7846 8002 6771 6375 6609 6574 ]
C [ 4220 4154 4480 4834 4361 5132 5147 5296 4065 4280 3998 5776 4377 4002 4155 4908 4174 4717 3220 4929 2360 1978 102 67 209 3882 69 16257 127 11 5507 6983 4744 5803 4915 4230 6104 5014 5495 4618 5443 4207 4079 6105 4521 4239 5250 5601 4135 5646 ]
G [ 4814 5926 4473 4219 4835 4203 4256 4371 5051 5434 5495 4172 4033 5452 5580 4438 5575 4355 6576 5213 5971 7574 77 9242 10630 1802 23335 8 2 4 2150 2721 4011 3352 4455 5520 4277 4333 4103 4271 4466 4082 5474 4435 4178 4586 4252 4125 4119 4334 ]
T [ 7662 6691 8086 7355 7202 7532 7010 6498 6373 7068 6508 6887 7710 7395 7218 6383 6275 7312 5174 6362 9069 436 23141 14022 3351 15470 21 3370 10 18 15522 3568 7113 8806 7447 6513 6620 7603 6593 6405 6699 7823 7140 6635 6895 6613 7167 7339 8577 6886 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.01 0.06 -0.09 -0.09 0.05 -0.04 -0.00 0.02 0.13 0.15 -0.07 0.03 0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.01 -0.03 -0.08 -0.11 0.13 -0.04 0.10 0.02 -0.08 0.05 0.03 0.02 0.02 0.01 ]
G [ 0.01 0.02 0.02 0.03 0.05 -0.07 0.06 0.06 -0.04 0.15 -0.15 -0.08 -0.04 0.01 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.00 0.02 -0.06 0.13 0.09 0.02 0.02 -0.03 0.04 -0.11 -0.09 0.06 -0.01 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4235

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 935

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 611

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 98

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 43

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages