Detailed information of deep learning profile BP000556.1

  1. Home
  2. Deep Learning Profile > BP000556.1
This page shows detailed deep learning-derived predictions and motifs for CEBPB in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000556.1
Cell line/tissue: IMR-90
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000EFM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.04 0.00 0.00 0.00 0.00 0.01 0.00 0.06 0.13 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.15 -0.00 0.04 0.03 0.00 0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 0.15 0.13 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6886 8577 7339 7167 6613 6895 6635 7140 7823 6699 6405 6593 7603 6620 6513 7447 8806 7113 3568 15522 18 10 3370 21 15470 3351 14022 23141 436 9069 6362 5174 7312 6275 6383 7218 7395 7710 6887 6508 7068 6373 6498 7010 7532 7202 7355 8086 6691 7662 ]
C [ 4334 4119 4125 4252 4586 4178 4435 5474 4082 4466 4271 4103 4333 4277 5520 4455 3352 4011 2721 2150 4 2 8 23335 1802 10630 9242 77 7574 5971 5213 6576 4355 5575 4438 5580 5452 4033 4172 5495 5434 5051 4371 4256 4203 4835 4219 4473 5926 4814 ]
G [ 5646 4135 5601 5250 4239 4521 6105 4079 4207 5443 4618 5495 5014 6104 4230 4915 5803 4744 6983 5507 11 127 16257 69 3882 209 67 102 1978 2360 4929 3220 4717 4174 4908 4155 4002 4377 5776 3998 4280 4065 5296 5147 5132 4361 4834 4480 4154 4220 ]
T [ 6574 6609 6375 6771 8002 7846 6265 6747 7328 6832 8146 7249 6490 6439 7177 6623 5479 7572 10168 261 23407 23301 3805 15 2286 9250 109 120 13452 6040 6936 8470 7056 7416 7711 6487 6591 7320 6605 7439 6658 7951 7275 7027 6573 7042 7032 6401 6669 6744 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.01 0.06 -0.09 -0.11 0.04 -0.03 0.02 0.02 0.09 0.13 -0.06 0.02 0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.01 -0.04 -0.08 -0.15 0.15 -0.04 0.06 0.06 -0.07 0.05 0.03 0.02 0.02 0.01 ]
G [ 0.01 0.02 0.02 0.03 0.05 -0.08 0.02 0.10 -0.04 0.13 -0.11 -0.08 -0.03 0.01 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.00 0.03 -0.07 0.15 0.13 0.02 -0.00 -0.04 0.05 -0.09 -0.09 0.06 -0.01 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4235

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 935

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 611

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 98

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 43

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages